Strain Fitness in Variovorax sp. SCN45 around GFF4607

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4606 and GFF4607 overlap by 4 nucleotidesGFF4607 and GFF4608 are separated by 62 nucleotides GFF4606 - 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16), at 247,365 to 248,561 GFF4606 GFF4607 - Putative DNA methylase, at 248,558 to 248,974 GFF4607 GFF4608 - 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17), at 249,037 to 251,436 GFF4608 Position (kb) 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 247.640 kb on - strand, within GFF4606at 248.479 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.539 kb on + strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.540 kb on - strandat 248.705 kb on + strand, within GFF4607at 248.751 kb on + strand, within GFF4607at 248.752 kb on - strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.829 kb on + strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.830 kb on - strand, within GFF4607at 248.974 kb on + strandat 248.975 kb on - strandat 249.143 kb on + strandat 249.143 kb on + strandat 249.143 kb on + strandat 249.144 kb on - strandat 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.371 kb on + strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.372 kb on - strand, within GFF4608at 249.419 kb on + strand, within GFF4608at 249.420 kb on - strand, within GFF4608at 249.420 kb on - strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.554 kb on + strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.555 kb on - strand, within GFF4608at 249.611 kb on + strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.612 kb on - strand, within GFF4608at 249.644 kb on + strand, within GFF4608at 249.644 kb on + strand, within GFF4608at 249.860 kb on + strand, within GFF4608at 249.860 kb on + strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608at 249.861 kb on - strand, within GFF4608

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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247,640 - GFF4606 0.23 -0.3
248,479 + -0.7
248,539 + -2.2
248,539 + +0.1
248,539 + -1.8
248,539 + +0.8
248,539 + -0.8
248,539 + -0.3
248,540 - -0.1
248,540 - +0.2
248,540 - -1.4
248,540 - +0.5
248,540 - -0.8
248,540 - -0.1
248,705 + GFF4607 0.35 -0.0
248,751 + GFF4607 0.46 +1.0
248,752 - GFF4607 0.47 +0.5
248,829 + GFF4607 0.65 +0.7
248,829 + GFF4607 0.65 +0.0
248,829 + GFF4607 0.65 -0.7
248,829 + GFF4607 0.65 +1.8
248,830 - GFF4607 0.65 +2.0
248,830 - GFF4607 0.65 +0.2
248,830 - GFF4607 0.65 +0.5
248,830 - GFF4607 0.65 -0.8
248,830 - GFF4607 0.65 -0.8
248,830 - GFF4607 0.65 +0.0
248,830 - GFF4607 0.65 -1.3
248,974 + -1.5
248,975 - +0.0
249,143 + +0.4
249,143 + -0.8
249,143 + -0.0
249,144 - +0.6
249,371 + GFF4608 0.14 -1.0
249,371 + GFF4608 0.14 +0.3
249,371 + GFF4608 0.14 -2.4
249,371 + GFF4608 0.14 +0.5
249,372 - GFF4608 0.14 -0.9
249,372 - GFF4608 0.14 -0.1
249,372 - GFF4608 0.14 -0.5
249,372 - GFF4608 0.14 +0.1
249,419 + GFF4608 0.16 -0.8
249,420 - GFF4608 0.16 -1.3
249,420 - GFF4608 0.16 -0.6
249,554 + GFF4608 0.22 -1.1
249,554 + GFF4608 0.22 +1.4
249,554 + GFF4608 0.22 +0.0
249,554 + GFF4608 0.22 -0.1
249,554 + GFF4608 0.22 -0.3
249,555 - GFF4608 0.22 -1.4
249,555 - GFF4608 0.22 -1.9
249,555 - GFF4608 0.22 -0.5
249,611 + GFF4608 0.24 +0.2
249,612 - GFF4608 0.24 -0.2
249,612 - GFF4608 0.24 -0.0
249,612 - GFF4608 0.24 +0.5
249,612 - GFF4608 0.24 +0.7
249,644 + GFF4608 0.25 -0.6
249,644 + GFF4608 0.25 +1.0
249,860 + GFF4608 0.34 +0.3
249,860 + GFF4608 0.34 -1.5
249,861 - GFF4608 0.34 -0.3
249,861 - GFF4608 0.34 -1.0
249,861 - GFF4608 0.34 -0.4
249,861 - GFF4608 0.34 -1.0

Or see this region's nucleotide sequence