Strain Fitness in Variovorax sp. SCN45 around GFF4545

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4543 and GFF4544 overlap by 4 nucleotidesGFF4544 and GFF4545 are separated by 161 nucleotidesGFF4545 and GFF4546 are separated by 127 nucleotides GFF4543 - no description, at 181,361 to 181,795 GFF4543 GFF4544 - RNA polymerase sigma factor RpoE, at 181,792 to 182,292 GFF4544 GFF4545 - Transcriptional regulator, AraC family, at 182,454 to 183,251 GFF4545 GFF4546 - Permease of the drug/metabolite transporter (DMT) superfamily, at 183,379 to 184,275 GFF4546 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2at 181.758 kb on + strandat 181.758 kb on + strandat 181.759 kb on - strandat 181.759 kb on - strandat 181.759 kb on - strandat 181.803 kb on - strandat 181.810 kb on + strandat 181.810 kb on + strandat 181.810 kb on + strandat 181.810 kb on + strandat 181.810 kb on + strandat 181.810 kb on + strandat 181.811 kb on - strandat 181.811 kb on - strandat 181.811 kb on - strandat 181.811 kb on - strandat 181.925 kb on + strand, within GFF4544at 181.925 kb on + strand, within GFF4544at 181.925 kb on + strand, within GFF4544at 181.925 kb on + strand, within GFF4544at 181.925 kb on + strand, within GFF4544at 181.925 kb on + strand, within GFF4544at 181.926 kb on - strand, within GFF4544at 181.926 kb on - strand, within GFF4544at 181.926 kb on - strand, within GFF4544at 181.926 kb on - strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.928 kb on + strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 181.929 kb on - strand, within GFF4544at 182.102 kb on + strand, within GFF4544at 182.103 kb on - strand, within GFF4544at 182.103 kb on - strand, within GFF4544at 182.103 kb on - strand, within GFF4544at 182.327 kb on - strandat 182.408 kb on + strandat 182.408 kb on + strandat 182.408 kb on + strandat 182.485 kb on + strandat 182.548 kb on + strand, within GFF4545at 182.548 kb on + strand, within GFF4545at 182.549 kb on - strand, within GFF4545at 182.549 kb on - strand, within GFF4545at 182.797 kb on + strand, within GFF4545at 182.797 kb on + strand, within GFF4545at 182.797 kb on + strand, within GFF4545at 182.798 kb on - strand, within GFF4545at 182.983 kb on + strand, within GFF4545at 182.983 kb on + strand, within GFF4545at 182.983 kb on + strand, within GFF4545at 182.983 kb on + strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.984 kb on - strand, within GFF4545at 182.995 kb on + strand, within GFF4545at 182.996 kb on - strand, within GFF4545at 182.996 kb on - strand, within GFF4545at 183.055 kb on + strand, within GFF4545at 183.055 kb on + strand, within GFF4545at 183.056 kb on - strand, within GFF4545at 183.056 kb on - strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.118 kb on + strand, within GFF4545at 183.119 kb on - strand, within GFF4545at 183.119 kb on - strand, within GFF4545at 183.119 kb on - strand, within GFF4545at 183.119 kb on - strand, within GFF4545at 183.190 kb on + strandat 183.190 kb on + strandat 183.190 kb on + strandat 183.190 kb on + strandat 183.191 kb on - strandat 183.191 kb on - strandat 183.191 kb on - strandat 183.319 kb on + strandat 183.319 kb on + strandat 183.319 kb on + strandat 183.320 kb on - strandat 183.321 kb on + strandat 183.321 kb on + strandat 183.321 kb on + strandat 183.321 kb on + strandat 183.322 kb on - strandat 183.349 kb on - strandat 183.349 kb on - strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.388 kb on + strandat 183.389 kb on - strandat 183.389 kb on - strandat 183.389 kb on - strandat 183.484 kb on + strand, within GFF4546at 183.484 kb on + strand, within GFF4546at 183.484 kb on + strand, within GFF4546at 183.484 kb on + strand, within GFF4546at 183.484 kb on + strand, within GFF4546at 183.485 kb on - strand, within GFF4546at 183.485 kb on - strand, within GFF4546at 183.485 kb on - strand, within GFF4546at 183.610 kb on + strand, within GFF4546at 183.610 kb on + strand, within GFF4546at 183.610 kb on + strand, within GFF4546at 183.610 kb on + strand, within GFF4546at 183.610 kb on + strand, within GFF4546at 183.611 kb on - strand, within GFF4546at 183.611 kb on - strand, within GFF4546at 183.611 kb on - strand, within GFF4546at 183.625 kb on + strand, within GFF4546at 183.625 kb on + strand, within GFF4546at 183.625 kb on + strand, within GFF4546at 183.625 kb on + strand, within GFF4546at 183.625 kb on + strand, within GFF4546at 183.626 kb on - strand, within GFF4546at 183.626 kb on - strand, within GFF4546at 183.626 kb on - strand, within GFF4546at 183.626 kb on - strand, within GFF4546at 183.626 kb on - strand, within GFF4546at 183.628 kb on + strand, within GFF4546at 183.628 kb on + strand, within GFF4546at 183.629 kb on - strand, within GFF4546at 183.637 kb on + strand, within GFF4546at 183.638 kb on - strand, within GFF4546at 183.638 kb on - strand, within GFF4546at 183.638 kb on - strand, within GFF4546at 183.865 kb on + strand, within GFF4546at 183.865 kb on + strand, within GFF4546at 183.865 kb on + strand, within GFF4546at 183.865 kb on + strand, within GFF4546at 183.866 kb on - strand, within GFF4546at 183.866 kb on - strand, within GFF4546at 183.866 kb on - strand, within GFF4546at 183.866 kb on - strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.874 kb on + strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.875 kb on - strand, within GFF4546at 183.931 kb on + strand, within GFF4546at 183.931 kb on + strand, within GFF4546at 183.932 kb on - strand, within GFF4546at 183.932 kb on - strand, within GFF4546at 183.932 kb on - strand, within GFF4546at 183.973 kb on + strand, within GFF4546at 183.973 kb on + strand, within GFF4546at 183.973 kb on + strand, within GFF4546at 183.973 kb on + strand, within GFF4546at 183.973 kb on + strand, within GFF4546at 183.974 kb on - strand, within GFF4546at 183.974 kb on - strand, within GFF4546at 184.180 kb on + strand, within GFF4546at 184.180 kb on + strand, within GFF4546at 184.180 kb on + strand, within GFF4546at 184.180 kb on + strand, within GFF4546at 184.180 kb on + strand, within GFF4546at 184.181 kb on - strand, within GFF4546at 184.181 kb on - strand, within GFF4546

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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181,758 + -0.8
181,758 + -0.7
181,759 - -0.4
181,759 - -0.9
181,759 - -0.1
181,803 - -0.6
181,810 + +0.5
181,810 + +0.5
181,810 + -0.8
181,810 + -1.1
181,810 + -0.5
181,810 + -1.2
181,811 - +1.3
181,811 - +0.8
181,811 - -1.0
181,811 - +0.1
181,925 + GFF4544 0.27 +0.8
181,925 + GFF4544 0.27 +0.5
181,925 + GFF4544 0.27 -0.2
181,925 + GFF4544 0.27 -1.1
181,925 + GFF4544 0.27 -1.7
181,925 + GFF4544 0.27 -0.2
181,926 - GFF4544 0.27 +0.9
181,926 - GFF4544 0.27 -0.0
181,926 - GFF4544 0.27 -0.2
181,926 - GFF4544 0.27 +1.2
181,928 + GFF4544 0.27 +1.0
181,928 + GFF4544 0.27 -0.3
181,928 + GFF4544 0.27 +0.2
181,928 + GFF4544 0.27 -0.5
181,928 + GFF4544 0.27 -0.3
181,928 + GFF4544 0.27 -0.9
181,928 + GFF4544 0.27 -0.6
181,929 - GFF4544 0.27 -0.8
181,929 - GFF4544 0.27 -0.5
181,929 - GFF4544 0.27 -0.6
181,929 - GFF4544 0.27 -1.0
181,929 - GFF4544 0.27 -0.3
181,929 - GFF4544 0.27 -1.0
182,102 + GFF4544 0.62 -0.0
182,103 - GFF4544 0.62 +0.1
182,103 - GFF4544 0.62 -0.3
182,103 - GFF4544 0.62 -0.6
182,327 - -0.1
182,408 + -0.3
182,408 + -0.6
182,408 + -0.9
182,485 + -1.0
182,548 + GFF4545 0.12 +1.3
182,548 + GFF4545 0.12 -0.6
182,549 - GFF4545 0.12 -1.4
182,549 - GFF4545 0.12 -1.4
182,797 + GFF4545 0.43 -0.3
182,797 + GFF4545 0.43 -0.7
182,797 + GFF4545 0.43 +0.0
182,798 - GFF4545 0.43 -0.3
182,983 + GFF4545 0.66 -0.1
182,983 + GFF4545 0.66 -0.8
182,983 + GFF4545 0.66 +0.8
182,983 + GFF4545 0.66 -0.1
182,984 - GFF4545 0.66 +0.5
182,984 - GFF4545 0.66 -0.2
182,984 - GFF4545 0.66 +0.5
182,984 - GFF4545 0.66 +1.2
182,984 - GFF4545 0.66 -1.1
182,984 - GFF4545 0.66 +0.1
182,984 - GFF4545 0.66 +1.6
182,984 - GFF4545 0.66 +0.1
182,984 - GFF4545 0.66 -0.2
182,995 + GFF4545 0.68 -0.7
182,996 - GFF4545 0.68 -0.3
182,996 - GFF4545 0.68 +0.5
183,055 + GFF4545 0.75 +0.7
183,055 + GFF4545 0.75 +1.5
183,056 - GFF4545 0.75 +0.1
183,056 - GFF4545 0.75 +0.5
183,118 + GFF4545 0.83 +0.7
183,118 + GFF4545 0.83 -1.8
183,118 + GFF4545 0.83 -1.0
183,118 + GFF4545 0.83 +1.0
183,118 + GFF4545 0.83 -0.4
183,118 + GFF4545 0.83 +1.3
183,119 - GFF4545 0.83 +2.0
183,119 - GFF4545 0.83 +0.1
183,119 - GFF4545 0.83 -0.1
183,119 - GFF4545 0.83 +0.2
183,190 + -0.4
183,190 + +1.0
183,190 + +0.5
183,190 + -1.1
183,191 - -0.5
183,191 - -0.0
183,191 - -0.4
183,319 + +0.4
183,319 + -0.0
183,319 + +0.1
183,320 - -0.7
183,321 + +0.5
183,321 + +0.2
183,321 + +0.1
183,321 + -0.1
183,322 - -1.3
183,349 - +0.0
183,349 - +0.3
183,388 + +0.6
183,388 + -0.2
183,388 + -1.8
183,388 + +0.0
183,388 + -0.6
183,388 + -0.8
183,388 + -0.8
183,388 + -0.3
183,388 + -0.3
183,388 + +1.5
183,389 - -0.6
183,389 - +0.1
183,389 - -1.8
183,484 + GFF4546 0.12 -0.1
183,484 + GFF4546 0.12 -2.7
183,484 + GFF4546 0.12 +0.3
183,484 + GFF4546 0.12 -0.8
183,484 + GFF4546 0.12 +0.2
183,485 - GFF4546 0.12 +1.3
183,485 - GFF4546 0.12 +0.9
183,485 - GFF4546 0.12 +0.2
183,610 + GFF4546 0.26 +0.5
183,610 + GFF4546 0.26 -1.1
183,610 + GFF4546 0.26 +0.1
183,610 + GFF4546 0.26 -0.3
183,610 + GFF4546 0.26 +1.0
183,611 - GFF4546 0.26 -0.3
183,611 - GFF4546 0.26 +0.4
183,611 - GFF4546 0.26 +0.1
183,625 + GFF4546 0.27 -1.3
183,625 + GFF4546 0.27 +0.0
183,625 + GFF4546 0.27 +1.0
183,625 + GFF4546 0.27 -0.5
183,625 + GFF4546 0.27 -0.0
183,626 - GFF4546 0.28 -0.3
183,626 - GFF4546 0.28 -0.2
183,626 - GFF4546 0.28 -0.4
183,626 - GFF4546 0.28 -0.2
183,626 - GFF4546 0.28 +0.5
183,628 + GFF4546 0.28 -0.7
183,628 + GFF4546 0.28 -0.3
183,629 - GFF4546 0.28 +0.6
183,637 + GFF4546 0.29 +0.9
183,638 - GFF4546 0.29 +1.2
183,638 - GFF4546 0.29 -1.4
183,638 - GFF4546 0.29 +0.2
183,865 + GFF4546 0.54 -0.5
183,865 + GFF4546 0.54 +0.5
183,865 + GFF4546 0.54 -0.2
183,865 + GFF4546 0.54 -0.4
183,866 - GFF4546 0.54 -1.0
183,866 - GFF4546 0.54 +0.3
183,866 - GFF4546 0.54 -0.7
183,866 - GFF4546 0.54 +1.0
183,874 + GFF4546 0.55 -0.1
183,874 + GFF4546 0.55 +0.4
183,874 + GFF4546 0.55 +0.8
183,874 + GFF4546 0.55 -0.3
183,874 + GFF4546 0.55 +0.1
183,874 + GFF4546 0.55 +0.0
183,874 + GFF4546 0.55 -0.1
183,874 + GFF4546 0.55 +0.5
183,874 + GFF4546 0.55 +1.5
183,874 + GFF4546 0.55 -0.1
183,874 + GFF4546 0.55 -0.5
183,875 - GFF4546 0.55 +0.2
183,875 - GFF4546 0.55 +0.3
183,875 - GFF4546 0.55 -0.0
183,875 - GFF4546 0.55 -1.1
183,875 - GFF4546 0.55 +0.5
183,875 - GFF4546 0.55 -0.5
183,875 - GFF4546 0.55 +0.1
183,875 - GFF4546 0.55 +0.3
183,875 - GFF4546 0.55 +0.2
183,875 - GFF4546 0.55 +1.3
183,875 - GFF4546 0.55 -0.2
183,875 - GFF4546 0.55 -0.1
183,875 - GFF4546 0.55 -0.1
183,875 - GFF4546 0.55 -0.8
183,875 - GFF4546 0.55 -0.3
183,875 - GFF4546 0.55 -0.5
183,875 - GFF4546 0.55 +0.0
183,875 - GFF4546 0.55 +1.6
183,931 + GFF4546 0.62 -0.3
183,931 + GFF4546 0.62 -1.0
183,932 - GFF4546 0.62 -1.9
183,932 - GFF4546 0.62 -0.6
183,932 - GFF4546 0.62 -1.3
183,973 + GFF4546 0.66 +0.0
183,973 + GFF4546 0.66 -0.1
183,973 + GFF4546 0.66 +0.2
183,973 + GFF4546 0.66 -0.5
183,973 + GFF4546 0.66 -0.1
183,974 - GFF4546 0.66 +0.8
183,974 - GFF4546 0.66 -0.5
184,180 + GFF4546 0.89 +0.2
184,180 + GFF4546 0.89 -0.5
184,180 + GFF4546 0.89 +0.4
184,180 + GFF4546 0.89 +0.4
184,180 + GFF4546 0.89 -0.5
184,181 - GFF4546 0.89 -1.3
184,181 - GFF4546 0.89 -0.6

Or see this region's nucleotide sequence