Strain Fitness in Variovorax sp. SCN45 around GFF4194

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
108,271	+		GFF4193	0.38	-0.3
108,272	-		GFF4193	0.38	+0.1
108,272	-		GFF4193	0.38	+0.7
108,427	+		GFF4193	0.51	+0.3
108,428	-		GFF4193	0.51	+0.1
108,796	+		GFF4193	0.83	-1.2
108,919	+				-0.9
109,030	+				+0.7
109,218	+		GFF4194	0.15	-0.8
109,218	+		GFF4194	0.15	-0.6
109,218	+		GFF4194	0.15	+0.2
109,219	-		GFF4194	0.15	-0.6
109,346	-		GFF4194	0.26	-0.0
109,375	+		GFF4194	0.28	-0.6
109,411	+		GFF4194	0.31	-1.5
109,412	-		GFF4194	0.31	+0.2
109,574	-		GFF4194	0.44	-0.6
109,678	+		GFF4194	0.53	-1.0
110,498	+		GFF4195	0.23	-0.3
110,615	+		GFF4195	0.36	-1.5
110,615	+		GFF4195	0.36	-0.2
110,616	-		GFF4195	0.36	-0.8
110,706	+		GFF4195	0.45	-1.2
110,707	-		GFF4195	0.45	-0.6
110,844	-		GFF4195	0.59	-1.2
110,939	+		GFF4195	0.69	-0.7
110,939	+		GFF4195	0.69	-0.4
110,939	+		GFF4195	0.69	-0.2
111,017	+		GFF4195	0.78	+1.0
111,018	-		GFF4195	0.78	-0.2