Strain Fitness in Variovorax sp. SCN45 around GFF3886

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
81,950	+				-1.0
81,950	+				+0.8
81,950	+				-1.4
81,950	+				+0.6
81,950	+				+0.9
81,950	+				-0.5
81,950	+				+0.5
81,950	+				+0.9
81,950	+				-2.8
81,950	+				-0.3
81,951	-				-0.5
81,951	-				+0.6
81,951	-				-0.3
81,951	-				+0.7
81,951	-				-1.2
81,951	-				+0.5
81,951	-				-0.5
81,951	-				+0.1
81,951	-				-0.2
81,951	-				-2.0
81,951	-				-0.3
81,951	-				+0.3
81,951	-				-0.4
81,951	-				-0.6
81,951	-				+0.9
81,951	-				-0.5
81,951	-				+0.9
82,007	+				+0.1
82,008	-				-0.5
82,025	+		GFF3885	0.11	-0.4
82,025	+		GFF3885	0.11	-0.7
82,415	+		GFF3885	0.59	+1.5
82,415	+		GFF3885	0.59	-0.4
82,415	+		GFF3885	0.59	-0.1
82,415	+		GFF3885	0.59	-1.4
82,415	+		GFF3885	0.59	-0.2
82,415	+		GFF3885	0.59	-1.1
82,416	-		GFF3885	0.59	-0.6
82,416	-		GFF3885	0.59	-0.4
82,416	-		GFF3885	0.59	-0.2
82,416	-		GFF3885	0.59	+0.1
82,416	-		GFF3885	0.59	-0.1
82,416	-		GFF3885	0.59	+0.1
82,416	-		GFF3885	0.59	-1.5
82,416	-		GFF3885	0.59	-0.4
82,416	-		GFF3885	0.59	-0.2
82,416	-		GFF3885	0.59	+0.0
82,416	-		GFF3885	0.59	+1.9
82,421	+		GFF3885	0.60	-0.2
82,421	+		GFF3885	0.60	-1.2
82,421	+		GFF3885	0.60	-0.1
82,422	-		GFF3885	0.60	-1.5
82,422	-		GFF3885	0.60	-0.6
82,706	+				+1.6
82,706	+				-0.2
82,707	-				-0.9
82,707	-				-0.9
82,707	-				+0.1
82,707	-				+1.3
82,707	-				+0.4
82,721	+				+1.5
82,722	-				+0.1
82,722	-				+0.1
82,732	+				+1.1
82,733	-				-0.3
82,733	-				-2.5
82,733	-				+0.1
82,733	-				-1.1
83,237	+		GFF3886	0.16	+1.3
83,238	-		GFF3886	0.16	-0.3
83,238	-		GFF3886	0.16	-0.5
83,238	-		GFF3886	0.16	-0.7
83,498	+		GFF3886	0.25	-0.7
83,499	-		GFF3886	0.26	+0.5
83,499	-		GFF3886	0.26	-0.4
83,499	-		GFF3886	0.26	-0.7
83,499	-		GFF3886	0.26	-0.3
83,603	+		GFF3886	0.29	-0.9
83,604	-		GFF3886	0.29	+0.7
83,604	-		GFF3886	0.29	-1.0
83,604	-		GFF3886	0.29	+0.2
83,604	-		GFF3886	0.29	+0.0
83,604	-		GFF3886	0.29	-1.3
83,632	+		GFF3886	0.30	-0.4
83,723	+		GFF3886	0.33	-1.0
83,724	-		GFF3886	0.33	-1.3
83,724	-		GFF3886	0.33	-0.4
83,732	+		GFF3886	0.34	+0.2
83,732	+		GFF3886	0.34	+0.9
83,733	-		GFF3886	0.34	-1.2
83,733	-		GFF3886	0.34	-0.2
83,733	-		GFF3886	0.34	-0.7
83,733	-		GFF3886	0.34	-0.3
83,733	-		GFF3886	0.34	-1.1
83,733	-		GFF3886	0.34	+0.3
83,789	+		GFF3886	0.36	+1.2
83,789	+		GFF3886	0.36	+0.1
83,790	-		GFF3886	0.36	-0.7
83,790	-		GFF3886	0.36	-1.7
83,790	-		GFF3886	0.36	-1.0
83,936	+		GFF3886	0.41	-2.2
83,936	+		GFF3886	0.41	-1.2
83,936	+		GFF3886	0.41	-0.8
83,937	-		GFF3886	0.41	-2.0
83,937	-		GFF3886	0.41	-1.9
84,414	+		GFF3886	0.58	-2.2
84,414	+		GFF3886	0.58	-1.2
84,415	-		GFF3886	0.58	-0.5
84,415	-		GFF3886	0.58	-1.2
84,415	-		GFF3886	0.58	-0.7
84,415	-		GFF3886	0.58	-0.5
84,618	+		GFF3886	0.65	-0.7
84,618	+		GFF3886	0.65	-1.2
84,618	+		GFF3886	0.65	-0.1
84,618	+		GFF3886	0.65	-0.7
84,618	+		GFF3886	0.65	-1.3
84,618	+		GFF3886	0.65	-0.4
84,618	+		GFF3886	0.65	-1.4
84,619	-		GFF3886	0.65	-0.3
84,619	-		GFF3886	0.65	-2.0
84,619	-		GFF3886	0.65	-0.7
84,619	-		GFF3886	0.65	+1.3
84,675	-		GFF3886	0.67	-1.8
85,169	+		GFF3886	0.85	-0.5
85,169	+		GFF3886	0.85	+0.3
85,169	+		GFF3886	0.85	+0.4
85,169	+		GFF3886	0.85	-0.9
85,169	+		GFF3886	0.85	+0.6
85,169	+		GFF3886	0.85	+0.9
85,170	-		GFF3886	0.85	+0.0
85,170	-		GFF3886	0.85	-1.2
85,170	-		GFF3886	0.85	-1.7
85,170	-		GFF3886	0.85	+0.1
85,170	-		GFF3886	0.85	+0.9
85,170	-		GFF3886	0.85	-2.3
85,170	-		GFF3886	0.85	-1.7
85,170	-		GFF3886	0.85	-1.5
85,170	-		GFF3886	0.85	-1.1
85,265	+		GFF3886	0.88	-0.8
85,265	+		GFF3886	0.88	-1.7
85,265	+		GFF3886	0.88	+0.7
85,265	+		GFF3886	0.88	+0.1
85,265	+		GFF3886	0.88	+0.1
85,265	+		GFF3886	0.88	-2.9
85,266	-		GFF3886	0.88	-1.2
85,266	-		GFF3886	0.88	-3.7
85,266	-		GFF3886	0.88	-0.9
85,266	-		GFF3886	0.88	-1.7
85,266	-		GFF3886	0.88	-0.5
85,266	-		GFF3886	0.88	-0.7
85,300	+		GFF3886	0.89	-1.7
85,301	-		GFF3886	0.89	-0.3
85,301	-		GFF3886	0.89	-0.4
85,301	-		GFF3886	0.89	-1.4
85,301	-		GFF3886	0.89	-1.1
85,301	-		GFF3886	0.89	-1.8
85,322	+		GFF3886	0.90	-0.4
85,322	+		GFF3886	0.90	-1.1
85,322	+		GFF3886	0.90	-1.5
85,322	+		GFF3886	0.90	+1.9
85,322	+		GFF3886	0.90	+0.2
85,322	+		GFF3886	0.90	-0.1
85,322	+		GFF3886	0.90	-1.8
85,323	-				-1.2
85,323	-				-0.7
85,323	-				-1.8
85,323	-				-0.5
85,323	-				-0.3
85,323	-				-1.1
85,323	-				+0.9
85,323	-				-2.0
85,611	+				+0.1
85,611	+				-1.2
85,611	+				+0.1
85,611	+				-0.1
85,612	-				+0.5
85,612	-				-1.9
85,612	-				-0.4
85,637	+				-1.3
85,638	-				-1.7
85,648	+				-0.4
85,689	+				-0.7
85,689	+				+0.1
85,689	+				+0.5
85,689	+				-1.1
85,689	+				-0.7
85,690	-				-1.0
85,704	+				+0.2
85,704	+				+0.3
85,705	-				-0.7
85,705	-				-1.0
85,705	-				+1.9
85,705	-				-0.3
85,705	-				+0.1
85,706	+				+0.2
85,708	+				-0.7
85,708	+				-0.5
85,708	+				-0.8
85,708	+				+0.3
85,708	+				-0.5
85,708	+				+0.9
85,708	+				-0.3
85,708	+				-1.7
85,708	+				+0.3
85,708	+				+0.5
85,708	+				-1.2
85,708	+				+0.8
85,708	+				-0.1
85,708	+				-0.2
85,708	+				-0.9
85,708	+				-1.1
85,708	+				-1.4
85,708	+				-0.7
85,708	+				+0.5
85,708	+				-0.7
85,708	+				+0.3
85,708	+				+0.0
85,708	+				+1.7
85,709	-				+0.8
85,709	-				-1.6
85,709	-				-2.2
85,709	-				-1.2
85,709	-				-0.4
85,709	-				+0.2
85,709	-				-0.7
85,709	-				-0.8
85,709	-				-0.1
85,709	-				+0.2
85,709	-				+0.5
85,709	-				+0.2
85,709	-				-0.6
85,710	-				-0.6
85,721	+				+0.3
85,721	+				-0.3
85,721	+				+0.4
85,721	+				+0.3
85,721	+				-0.0
85,721	+				+1.6
85,721	+				-0.3
85,721	+				+0.1
85,721	+				-0.1
85,722	-				-0.2
85,722	-				-0.7
85,722	-				-0.1
85,722	-				-0.4
85,722	-				+0.0
85,722	-				+1.1
85,722	-				-0.9
85,722	-				+1.2
85,722	-				-0.4
85,722	-				+0.4
85,722	-				+1.0
85,722	-				+0.1