Strain Fitness in Variovorax sp. SCN45 around GFF373

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF371 and GFF372 are separated by 5 nucleotidesGFF372 and GFF373 are separated by 45 nucleotidesGFF373 and GFF374 are separated by 10 nucleotidesGFF374 and GFF375 are separated by 66 nucleotides GFF371 - RNA-binding protein YhbY, at 402,678 to 403,082 GFF371 GFF372 - PMID: 11481431, at 403,088 to 403,843 GFF372 GFF373 - Probable transmembrane protein, at 403,889 to 404,305 GFF373 GFF374 - Transcription elongation factor GreA, at 404,316 to 404,792 GFF374 GFF375 - hypothetical protein, at 404,859 to 405,728 GFF375 Position (kb) 403 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.943 kb on - strand, within GFF371at 403.114 kb on + strandat 403.114 kb on + strandat 403.115 kb on - strandat 403.115 kb on - strandat 403.143 kb on - strandat 403.154 kb on + strandat 403.155 kb on - strandat 403.169 kb on + strand, within GFF372at 403.170 kb on - strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.361 kb on - strand, within GFF372at 403.451 kb on + strand, within GFF372at 403.499 kb on + strand, within GFF372at 403.500 kb on - strand, within GFF372at 403.539 kb on - strand, within GFF372at 403.575 kb on - strand, within GFF372at 403.592 kb on + strand, within GFF372at 403.592 kb on + strand, within GFF372at 403.593 kb on - strand, within GFF372at 403.593 kb on - strand, within GFF372at 403.631 kb on + strand, within GFF372at 403.631 kb on + strand, within GFF372at 403.664 kb on + strand, within GFF372at 403.664 kb on + strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.829 kb on + strandat 403.829 kb on + strandat 403.886 kb on - strandat 403.886 kb on - strandat 403.886 kb on - strandat 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.323 kb on + strandat 404.323 kb on + strandat 404.323 kb on + strandat 404.324 kb on - strandat 404.324 kb on - strandat 404.344 kb on + strandat 404.470 kb on - strand, within GFF374at 404.470 kb on - strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.651 kb on - strand, within GFF374at 404.808 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.920 kb on + strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.921 kb on - strandat 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.962 kb on + strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 404.963 kb on - strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.061 kb on + strand, within GFF375at 405.062 kb on - strand, within GFF375at 405.062 kb on - strand, within GFF375at 405.112 kb on + strand, within GFF375at 405.113 kb on - strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.175 kb on + strand, within GFF375at 405.176 kb on - strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.295 kb on + strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375at 405.296 kb on - strand, within GFF375

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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402,942 + GFF371 0.65 -0.4
402,942 + GFF371 0.65 -0.4
402,942 + GFF371 0.65 +0.3
402,942 + GFF371 0.65 -0.4
402,943 - GFF371 0.65 -0.9
403,114 + +0.0
403,114 + +0.0
403,115 - +0.0
403,115 - -0.9
403,143 - -1.9
403,154 + -1.6
403,155 - -1.7
403,169 + GFF372 0.11 -0.4
403,170 - GFF372 0.11 -2.5
403,346 + GFF372 0.34 -2.1
403,346 + GFF372 0.34 -1.9
403,346 + GFF372 0.34 -2.5
403,347 - GFF372 0.34 -1.7
403,347 - GFF372 0.34 -1.2
403,347 - GFF372 0.34 -2.7
403,361 - GFF372 0.36 -0.4
403,451 + GFF372 0.48 -1.1
403,499 + GFF372 0.54 -1.4
403,500 - GFF372 0.54 -1.4
403,539 - GFF372 0.60 -2.7
403,575 - GFF372 0.64 +0.0
403,592 + GFF372 0.67 -2.3
403,592 + GFF372 0.67 -1.3
403,593 - GFF372 0.67 -3.3
403,593 - GFF372 0.67 -3.5
403,631 + GFF372 0.72 -1.4
403,631 + GFF372 0.72 -2.0
403,664 + GFF372 0.76 -0.7
403,664 + GFF372 0.76 -1.3
403,665 - GFF372 0.76 -1.4
403,665 - GFF372 0.76 -2.9
403,665 - GFF372 0.76 -3.5
403,665 - GFF372 0.76 -1.2
403,694 + GFF372 0.80 -3.0
403,694 + GFF372 0.80 -0.6
403,694 + GFF372 0.80 -1.4
403,694 + GFF372 0.80 +0.0
403,694 + GFF372 0.80 -3.0
403,695 - GFF372 0.80 -0.3
403,695 - GFF372 0.80 -3.5
403,695 - GFF372 0.80 -2.8
403,695 - GFF372 0.80 +0.9
403,829 + -1.9
403,829 + +0.3
403,886 - -1.6
403,886 - -0.6
403,886 - -0.6
403,953 + GFF373 0.15 -0.1
403,953 + GFF373 0.15 +1.2
403,953 + GFF373 0.15 +1.9
403,953 + GFF373 0.15 +0.2
403,953 + GFF373 0.15 -0.4
403,953 + GFF373 0.15 -0.4
403,953 + GFF373 0.15 +0.0
403,953 + GFF373 0.15 -1.3
403,953 + GFF373 0.15 +0.4
403,953 + GFF373 0.15 +0.5
403,953 + GFF373 0.15 -0.9
403,953 + GFF373 0.15 -0.5
403,954 - GFF373 0.16 -0.5
403,954 - GFF373 0.16 +0.3
403,954 - GFF373 0.16 +0.0
403,954 - GFF373 0.16 -0.9
403,954 - GFF373 0.16 +0.5
403,954 - GFF373 0.16 -0.2
403,954 - GFF373 0.16 +0.3
403,954 - GFF373 0.16 -0.9
403,954 - GFF373 0.16 +0.2
403,954 - GFF373 0.16 +0.5
403,954 - GFF373 0.16 -1.6
403,954 - GFF373 0.16 -0.2
403,954 - GFF373 0.16 +2.1
403,954 - GFF373 0.16 +0.2
404,022 + GFF373 0.32 +0.0
404,022 + GFF373 0.32 -0.5
404,022 + GFF373 0.32 -0.3
404,022 + GFF373 0.32 -2.1
404,022 + GFF373 0.32 -0.4
404,022 + GFF373 0.32 -0.1
404,022 + GFF373 0.32 -0.4
404,022 + GFF373 0.32 +0.1
404,022 + GFF373 0.32 +0.2
404,023 - GFF373 0.32 -0.1
404,023 - GFF373 0.32 +0.4
404,323 + +0.3
404,323 + +0.6
404,323 + -0.9
404,324 - -0.6
404,324 - -0.1
404,344 + -0.9
404,470 - GFF374 0.32 -0.7
404,470 - GFF374 0.32 -0.8
404,479 + GFF374 0.34 +0.2
404,479 + GFF374 0.34 -0.0
404,479 + GFF374 0.34 +0.3
404,650 + GFF374 0.70 +1.1
404,650 + GFF374 0.70 -0.6
404,651 - GFF374 0.70 -0.4
404,808 + -2.4
404,920 + +0.4
404,920 + +0.6
404,920 + +0.3
404,920 + +0.0
404,920 + -0.7
404,920 + -0.3
404,920 + -0.1
404,920 + +0.1
404,920 + +0.2
404,920 + -2.4
404,921 - +0.4
404,921 - -0.7
404,921 - -0.5
404,921 - +1.3
404,921 - +0.6
404,962 + GFF375 0.12 -0.8
404,962 + GFF375 0.12 +1.2
404,962 + GFF375 0.12 -1.7
404,962 + GFF375 0.12 +0.1
404,962 + GFF375 0.12 -0.3
404,962 + GFF375 0.12 +1.3
404,962 + GFF375 0.12 -1.7
404,962 + GFF375 0.12 -0.1
404,962 + GFF375 0.12 -0.3
404,962 + GFF375 0.12 +1.4
404,962 + GFF375 0.12 +0.0
404,962 + GFF375 0.12 +1.2
404,962 + GFF375 0.12 +0.3
404,962 + GFF375 0.12 -0.5
404,962 + GFF375 0.12 -0.4
404,962 + GFF375 0.12 -1.0
404,962 + GFF375 0.12 -0.9
404,962 + GFF375 0.12 -1.3
404,962 + GFF375 0.12 -0.3
404,962 + GFF375 0.12 +0.0
404,962 + GFF375 0.12 -0.1
404,962 + GFF375 0.12 -0.7
404,962 + GFF375 0.12 -1.1
404,962 + GFF375 0.12 +0.0
404,963 - GFF375 0.12 -0.4
404,963 - GFF375 0.12 +0.8
404,963 - GFF375 0.12 -1.0
404,963 - GFF375 0.12 +0.6
404,963 - GFF375 0.12 -0.5
404,963 - GFF375 0.12 +0.7
404,963 - GFF375 0.12 +1.8
404,963 - GFF375 0.12 -0.9
404,963 - GFF375 0.12 -1.4
404,963 - GFF375 0.12 -0.8
404,963 - GFF375 0.12 -1.1
404,963 - GFF375 0.12 +0.0
404,963 - GFF375 0.12 -2.0
404,963 - GFF375 0.12 +0.6
404,963 - GFF375 0.12 -0.5
404,963 - GFF375 0.12 +0.2
404,963 - GFF375 0.12 +1.1
404,963 - GFF375 0.12 -0.6
404,963 - GFF375 0.12 -0.8
404,963 - GFF375 0.12 +0.0
404,963 - GFF375 0.12 -0.7
404,963 - GFF375 0.12 -0.1
404,963 - GFF375 0.12 -1.7
404,963 - GFF375 0.12 -0.4
405,061 + GFF375 0.23 -1.4
405,061 + GFF375 0.23 -0.6
405,061 + GFF375 0.23 -0.7
405,062 - GFF375 0.23 +0.2
405,062 - GFF375 0.23 +0.1
405,112 + GFF375 0.29 +0.9
405,113 - GFF375 0.29 +0.5
405,175 + GFF375 0.36 -0.2
405,175 + GFF375 0.36 +0.4
405,175 + GFF375 0.36 +0.8
405,175 + GFF375 0.36 -0.1
405,176 - GFF375 0.36 +0.2
405,295 + GFF375 0.50 -0.1
405,295 + GFF375 0.50 -1.4
405,295 + GFF375 0.50 +0.0
405,295 + GFF375 0.50 -0.2
405,295 + GFF375 0.50 +2.0
405,295 + GFF375 0.50 +1.1
405,295 + GFF375 0.50 -0.2
405,296 - GFF375 0.50 +0.1
405,296 - GFF375 0.50 -0.7
405,296 - GFF375 0.50 +0.3
405,296 - GFF375 0.50 +0.2
405,296 - GFF375 0.50 -1.1
405,296 - GFF375 0.50 -0.7

Or see this region's nucleotide sequence