Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3687 and GFF3688 are separated by 12 nucleotides GFF3688 and GFF3689 are separated by 204 nucleotides GFF3689 and GFF3690 overlap by 4 nucleotides
GFF3687 - ATP synthase beta chain (EC 3.6.3.14), at 185,907 to 187,307
GFF3687
GFF3688 - ATP synthase epsilon chain (EC 3.6.3.14), at 187,320 to 187,739
GFF3688
GFF3689 - FIG01198523: hypothetical protein, at 187,944 to 189,146
GFF3689
GFF3690 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 189,143 to 190,690
GFF3690
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.305 kb on + strand at 187.659 kb on + strand, within GFF3688 at 187.722 kb on + strand at 187.722 kb on + strand at 187.722 kb on + strand at 187.722 kb on + strand at 187.722 kb on + strand at 187.723 kb on - strand at 187.723 kb on - strand at 187.723 kb on - strand at 187.737 kb on + strand at 187.737 kb on + strand at 187.737 kb on + strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.738 kb on - strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.873 kb on + strand at 187.874 kb on - strand at 187.874 kb on - strand at 187.874 kb on - strand at 187.876 kb on + strand at 187.877 kb on - strand at 188.311 kb on + strand, within GFF3689 at 188.312 kb on - strand, within GFF3689 at 188.312 kb on - strand, within GFF3689 at 188.312 kb on - strand, within GFF3689 at 188.464 kb on - strand, within GFF3689 at 188.464 kb on - strand, within GFF3689 at 188.479 kb on - strand, within GFF3689 at 188.479 kb on - strand, within GFF3689 at 188.622 kb on + strand, within GFF3689 at 188.622 kb on + strand, within GFF3689 at 188.623 kb on - strand, within GFF3689 at 189.012 kb on + strand, within GFF3689 at 189.012 kb on + strand, within GFF3689 at 189.012 kb on + strand, within GFF3689 at 189.013 kb on - strand, within GFF3689 at 189.013 kb on - strand, within GFF3689 at 189.057 kb on + strand at 189.057 kb on + strand at 189.057 kb on + strand at 189.057 kb on + strand at 189.057 kb on + strand at 189.057 kb on + strand at 189.058 kb on - strand at 189.058 kb on - strand at 189.269 kb on + strand at 189.269 kb on + strand at 189.269 kb on + strand at 189.269 kb on + strand at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.755 kb on + strand, within GFF3690 at 189.756 kb on - strand, within GFF3690 at 189.756 kb on - strand, within GFF3690 at 189.756 kb on - strand, within GFF3690 at 189.756 kb on - strand, within GFF3690 at 189.756 kb on - strand, within GFF3690 at 189.756 kb on - strand, within GFF3690
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 187,305 + +0.2 187,659 + GFF3688 0.81 +0.2 187,722 + -1.2 187,722 + +0.2 187,722 + -0.8 187,722 + +0.0 187,722 + -0.4 187,723 - -1.6 187,723 - -0.8 187,723 - +0.6 187,737 + -2.6 187,737 + +0.0 187,737 + -0.1 187,738 - -0.4 187,738 - -0.4 187,738 - -0.1 187,738 - -0.4 187,738 - -0.7 187,738 - -0.2 187,738 - +0.9 187,738 - +0.2 187,738 - +0.3 187,873 + +0.4 187,873 + +1.2 187,873 + +0.2 187,873 + +0.3 187,873 + -0.9 187,873 + +1.3 187,873 + +0.1 187,874 - +0.4 187,874 - +0.9 187,874 - +0.2 187,876 + +0.2 187,877 - +0.9 188,311 + GFF3689 0.31 -0.2 188,312 - GFF3689 0.31 +0.0 188,312 - GFF3689 0.31 +0.1 188,312 - GFF3689 0.31 +0.4 188,464 - GFF3689 0.43 -0.7 188,464 - GFF3689 0.43 -1.6 188,479 - GFF3689 0.44 +0.2 188,479 - GFF3689 0.44 -1.4 188,622 + GFF3689 0.56 +1.6 188,622 + GFF3689 0.56 +0.2 188,623 - GFF3689 0.56 +0.9 189,012 + GFF3689 0.89 -0.5 189,012 + GFF3689 0.89 +1.2 189,012 + GFF3689 0.89 +0.2 189,013 - GFF3689 0.89 +1.2 189,013 - GFF3689 0.89 +0.2 189,057 + +1.7 189,057 + -0.3 189,057 + -0.6 189,057 + -1.3 189,057 + +0.3 189,057 + -0.5 189,058 - -1.0 189,058 - +0.3 189,269 + -0.2 189,269 + +0.3 189,269 + -0.0 189,269 + +0.1 189,755 + GFF3690 0.40 +0.4 189,755 + GFF3690 0.40 -0.8 189,755 + GFF3690 0.40 -0.2 189,755 + GFF3690 0.40 -0.4 189,755 + GFF3690 0.40 -1.2 189,755 + GFF3690 0.40 -0.7 189,755 + GFF3690 0.40 +0.6 189,756 - GFF3690 0.40 -0.2 189,756 - GFF3690 0.40 -0.2 189,756 - GFF3690 0.40 -0.5 189,756 - GFF3690 0.40 +0.5 189,756 - GFF3690 0.40 -0.7 189,756 - GFF3690 0.40 +1.6
Or see this region's nucleotide sequence