Strain Fitness in Variovorax sp. SCN45 around GFF3561

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3560 and GFF3561 are separated by 36 nucleotidesGFF3561 and GFF3562 are separated by 96 nucleotides GFF3560 - hypothetical protein, at 71,021 to 72,040 GFF3560 GFF3561 - Glycosyltransferases involved in cell wall biogenesis, at 72,077 to 73,105 GFF3561 GFF3562 - UDP-glucose 6-dehydrogenase (EC 1.1.1.22), at 73,202 to 74,542 GFF3562 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2 3at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.172 kb on + strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.173 kb on - strand, within GFF3560at 71.269 kb on - strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.604 kb on + strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.605 kb on - strand, within GFF3560at 71.788 kb on - strand, within GFF3560at 72.090 kb on + strandat 72.090 kb on + strandat 72.090 kb on + strandat 72.091 kb on - strandat 72.091 kb on - strandat 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.342 kb on + strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.343 kb on - strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.372 kb on + strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.373 kb on - strand, within GFF3561at 72.460 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.520 kb on - strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.540 kb on + strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.541 kb on - strand, within GFF3561at 72.588 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.630 kb on + strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.631 kb on - strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.843 kb on + strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.844 kb on - strand, within GFF3561at 72.846 kb on + strand, within GFF3561at 73.153 kb on + strandat 73.154 kb on - strandat 73.229 kb on + strandat 73.230 kb on - strandat 73.763 kb on + strand, within GFF3562at 73.835 kb on + strand, within GFF3562at 73.835 kb on + strand, within GFF3562at 73.836 kb on - strand, within GFF3562at 73.836 kb on - strand, within GFF3562at 73.988 kb on + strand, within GFF3562

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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71,172 + GFF3560 0.15 +0.2
71,172 + GFF3560 0.15 -0.5
71,172 + GFF3560 0.15 +0.0
71,172 + GFF3560 0.15 +0.3
71,172 + GFF3560 0.15 +1.0
71,172 + GFF3560 0.15 +0.1
71,173 - GFF3560 0.15 -1.2
71,173 - GFF3560 0.15 -0.8
71,173 - GFF3560 0.15 -0.5
71,173 - GFF3560 0.15 -1.1
71,173 - GFF3560 0.15 -2.2
71,173 - GFF3560 0.15 -0.2
71,173 - GFF3560 0.15 -0.3
71,173 - GFF3560 0.15 -0.3
71,269 - GFF3560 0.24 -1.4
71,604 + GFF3560 0.57 -0.7
71,604 + GFF3560 0.57 -0.7
71,604 + GFF3560 0.57 +0.4
71,604 + GFF3560 0.57 -0.4
71,605 - GFF3560 0.57 -1.5
71,605 - GFF3560 0.57 +0.7
71,605 - GFF3560 0.57 -0.3
71,788 - GFF3560 0.75 +0.4
72,090 + -0.5
72,090 + +0.3
72,090 + -0.1
72,091 - +1.2
72,091 - -0.3
72,342 + GFF3561 0.26 -0.5
72,342 + GFF3561 0.26 -0.8
72,342 + GFF3561 0.26 -0.8
72,342 + GFF3561 0.26 -0.2
72,343 - GFF3561 0.26 +0.4
72,343 - GFF3561 0.26 +0.3
72,343 - GFF3561 0.26 -0.7
72,343 - GFF3561 0.26 -0.4
72,343 - GFF3561 0.26 -1.4
72,343 - GFF3561 0.26 +0.8
72,372 + GFF3561 0.29 -0.3
72,372 + GFF3561 0.29 -2.4
72,372 + GFF3561 0.29 -0.8
72,372 + GFF3561 0.29 -0.6
72,373 - GFF3561 0.29 +3.5
72,373 - GFF3561 0.29 -0.2
72,373 - GFF3561 0.29 +0.2
72,373 - GFF3561 0.29 -1.2
72,373 - GFF3561 0.29 -0.0
72,373 - GFF3561 0.29 +1.2
72,373 - GFF3561 0.29 -0.0
72,373 - GFF3561 0.29 +0.4
72,373 - GFF3561 0.29 +0.9
72,460 - GFF3561 0.37 -1.0
72,520 - GFF3561 0.43 -1.3
72,520 - GFF3561 0.43 -0.8
72,540 + GFF3561 0.45 -0.3
72,540 + GFF3561 0.45 -0.1
72,540 + GFF3561 0.45 -0.4
72,540 + GFF3561 0.45 -0.1
72,541 - GFF3561 0.45 -1.4
72,541 - GFF3561 0.45 +0.8
72,541 - GFF3561 0.45 -0.3
72,541 - GFF3561 0.45 +0.6
72,588 + GFF3561 0.50 -1.5
72,630 + GFF3561 0.54 +2.2
72,630 + GFF3561 0.54 +0.2
72,630 + GFF3561 0.54 -0.2
72,630 + GFF3561 0.54 -1.0
72,630 + GFF3561 0.54 -0.1
72,630 + GFF3561 0.54 +0.0
72,630 + GFF3561 0.54 +1.7
72,630 + GFF3561 0.54 +0.7
72,630 + GFF3561 0.54 -0.3
72,630 + GFF3561 0.54 -1.6
72,631 - GFF3561 0.54 -0.2
72,631 - GFF3561 0.54 -0.1
72,631 - GFF3561 0.54 +0.8
72,631 - GFF3561 0.54 -0.7
72,631 - GFF3561 0.54 -0.5
72,631 - GFF3561 0.54 +0.8
72,631 - GFF3561 0.54 -0.1
72,631 - GFF3561 0.54 -0.3
72,843 + GFF3561 0.74 -0.9
72,843 + GFF3561 0.74 +0.7
72,843 + GFF3561 0.74 +0.5
72,844 - GFF3561 0.75 +0.2
72,844 - GFF3561 0.75 -0.3
72,844 - GFF3561 0.75 +0.4
72,846 + GFF3561 0.75 -0.5
73,153 + +1.6
73,154 - +0.3
73,229 + -0.5
73,230 - +0.1
73,763 + GFF3562 0.42 +0.2
73,835 + GFF3562 0.47 -0.1
73,835 + GFF3562 0.47 -1.2
73,836 - GFF3562 0.47 -0.6
73,836 - GFF3562 0.47 -0.3
73,988 + GFF3562 0.59 +0.6

Or see this region's nucleotide sequence