Strain Fitness in Variovorax sp. SCN45 around GFF1878

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1876 and GFF1877 are separated by 9 nucleotidesGFF1877 and GFF1878 are separated by 33 nucleotidesGFF1878 and GFF1879 are separated by 31 nucleotides GFF1876 - Dihydrodipicolinate synthase family, at 549,594 to 550,487 GFF1876 GFF1877 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 550,497 to 551,279 GFF1877 GFF1878 - Bll6165 protein, at 551,313 to 551,723 GFF1878 GFF1879 - dicarboxylic acid transporter PcaT, at 551,755 to 553,101 GFF1879 Position (kb) 551 552Strain fitness (log2 ratio) -2 -1 0 1 2at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.335 kb on + strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.336 kb on - strand, within GFF1876at 550.490 kb on + strandat 550.490 kb on + strandat 550.490 kb on + strandat 550.491 kb on - strandat 550.951 kb on - strand, within GFF1877at 551.287 kb on + strandat 551.287 kb on + strandat 551.295 kb on - strandat 551.539 kb on - strand, within GFF1878at 551.550 kb on + strand, within GFF1878at 551.550 kb on + strand, within GFF1878at 551.551 kb on - strand, within GFF1878at 551.756 kb on + strandat 551.756 kb on + strandat 551.756 kb on + strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.757 kb on - strandat 551.774 kb on + strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.775 kb on - strandat 551.837 kb on + strandat 551.837 kb on + strandat 551.837 kb on + strandat 551.838 kb on - strandat 551.838 kb on - strandat 551.838 kb on - strandat 551.843 kb on + strandat 551.843 kb on + strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.844 kb on - strandat 551.849 kb on + strandat 551.849 kb on + strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.850 kb on - strandat 551.889 kb on - strandat 551.889 kb on - strandat 552.002 kb on + strand, within GFF1879at 552.002 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.185 kb on + strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.186 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.267 kb on - strand, within GFF1879at 552.308 kb on + strand, within GFF1879at 552.566 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.620 kb on + strand, within GFF1879at 552.621 kb on - strand, within GFF1879at 552.621 kb on - strand, within GFF1879at 552.621 kb on - strand, within GFF1879at 552.621 kb on - strand, within GFF1879at 552.621 kb on - strand, within GFF1879at 552.717 kb on - strand, within GFF1879at 552.717 kb on - strand, within GFF1879

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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550,335 + GFF1876 0.83 -0.3
550,335 + GFF1876 0.83 -1.3
550,335 + GFF1876 0.83 -0.5
550,335 + GFF1876 0.83 -0.1
550,336 - GFF1876 0.83 +0.0
550,336 - GFF1876 0.83 -0.0
550,336 - GFF1876 0.83 -0.2
550,336 - GFF1876 0.83 -0.7
550,490 + -1.0
550,490 + -1.3
550,490 + -0.3
550,491 - -0.7
550,951 - GFF1877 0.58 -0.1
551,287 + -0.2
551,287 + +0.2
551,295 - -0.3
551,539 - GFF1878 0.55 -0.7
551,550 + GFF1878 0.58 +0.8
551,550 + GFF1878 0.58 -0.3
551,551 - GFF1878 0.58 -0.1
551,756 + -0.1
551,756 + +0.2
551,756 + -0.7
551,757 - -0.1
551,757 - -1.0
551,757 - +0.1
551,757 - +0.1
551,757 - +1.6
551,774 + -0.6
551,775 - -0.9
551,775 - -0.7
551,775 - -0.7
551,775 - +0.0
551,837 + +0.2
551,837 + +1.0
551,837 + -0.0
551,838 - -1.0
551,838 - -1.4
551,838 - -1.6
551,843 + -1.1
551,843 + -0.4
551,844 - +0.0
551,844 - +0.2
551,844 - -1.0
551,844 - +0.2
551,844 - -0.8
551,844 - +0.2
551,849 + +0.3
551,849 + +0.9
551,850 - -0.1
551,850 - +0.3
551,850 - +0.6
551,850 - -0.2
551,889 - +0.3
551,889 - -0.7
552,002 + GFF1879 0.18 -0.6
552,002 + GFF1879 0.18 -0.0
552,185 + GFF1879 0.32 -1.9
552,185 + GFF1879 0.32 -1.7
552,185 + GFF1879 0.32 -0.1
552,185 + GFF1879 0.32 +2.4
552,185 + GFF1879 0.32 -0.0
552,185 + GFF1879 0.32 -0.3
552,185 + GFF1879 0.32 +0.6
552,185 + GFF1879 0.32 -0.1
552,185 + GFF1879 0.32 -0.3
552,185 + GFF1879 0.32 +1.0
552,185 + GFF1879 0.32 -0.3
552,186 - GFF1879 0.32 +1.6
552,186 - GFF1879 0.32 +0.4
552,186 - GFF1879 0.32 -0.1
552,186 - GFF1879 0.32 +0.1
552,186 - GFF1879 0.32 +0.3
552,186 - GFF1879 0.32 +0.2
552,186 - GFF1879 0.32 -0.9
552,186 - GFF1879 0.32 +0.8
552,186 - GFF1879 0.32 -0.8
552,186 - GFF1879 0.32 +0.5
552,186 - GFF1879 0.32 -0.3
552,186 - GFF1879 0.32 -0.3
552,186 - GFF1879 0.32 -1.4
552,267 - GFF1879 0.38 -0.6
552,267 - GFF1879 0.38 -1.8
552,267 - GFF1879 0.38 +0.3
552,267 - GFF1879 0.38 +0.6
552,267 - GFF1879 0.38 +0.1
552,267 - GFF1879 0.38 +1.9
552,267 - GFF1879 0.38 -1.0
552,267 - GFF1879 0.38 -2.0
552,308 + GFF1879 0.41 +0.2
552,566 + GFF1879 0.60 +1.2
552,620 + GFF1879 0.64 -0.2
552,620 + GFF1879 0.64 -1.0
552,620 + GFF1879 0.64 -1.0
552,620 + GFF1879 0.64 +1.0
552,620 + GFF1879 0.64 +0.3
552,620 + GFF1879 0.64 +0.4
552,620 + GFF1879 0.64 -0.3
552,621 - GFF1879 0.64 +0.2
552,621 - GFF1879 0.64 -0.1
552,621 - GFF1879 0.64 -0.1
552,621 - GFF1879 0.64 -1.1
552,621 - GFF1879 0.64 +0.4
552,717 - GFF1879 0.71 +0.3
552,717 - GFF1879 0.71 -0.8

Or see this region's nucleotide sequence