Strain Fitness in Variovorax sp. SCN45 around GFF1727

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1726 and GFF1727 are separated by 89 nucleotidesGFF1727 and GFF1728 are separated by 188 nucleotides GFF1726 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 374,559 to 386,978 GFF1726 GFF1727 - no description, at 387,068 to 387,604 GFF1727 GFF1728 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 387,793 to 389,034 GFF1728 Position (kb) 387 388Strain fitness (log2 ratio) -2 -1 0 1at 386.153 kb on + strandat 386.292 kb on + strandat 386.292 kb on + strandat 386.292 kb on + strandat 386.292 kb on + strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.293 kb on - strandat 386.415 kb on + strandat 386.415 kb on + strandat 386.415 kb on + strandat 386.416 kb on - strandat 386.436 kb on + strandat 386.436 kb on + strandat 386.436 kb on + strandat 386.437 kb on - strandat 386.437 kb on - strandat 386.976 kb on + strandat 387.116 kb on + strandat 387.116 kb on + strandat 387.116 kb on + strandat 387.117 kb on - strandat 387.117 kb on - strandat 387.245 kb on + strand, within GFF1727at 387.245 kb on + strand, within GFF1727at 387.245 kb on + strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.246 kb on - strand, within GFF1727at 387.251 kb on + strand, within GFF1727at 387.252 kb on - strand, within GFF1727at 387.444 kb on + strand, within GFF1727at 387.549 kb on - strand, within GFF1727at 387.682 kb on - strandat 387.786 kb on + strandat 387.786 kb on + strandat 387.786 kb on + strandat 387.787 kb on - strandat 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.198 kb on + strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.199 kb on - strand, within GFF1728at 388.465 kb on + strand, within GFF1728at 388.465 kb on + strand, within GFF1728at 388.465 kb on + strand, within GFF1728at 388.466 kb on - strand, within GFF1728at 388.466 kb on - strand, within GFF1728at 388.466 kb on - strand, within GFF1728at 388.478 kb on - strand, within GFF1728at 388.478 kb on - strand, within GFF1728at 388.498 kb on + strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.499 kb on - strand, within GFF1728at 388.537 kb on + strand, within GFF1728at 388.537 kb on + strand, within GFF1728at 388.537 kb on + strand, within GFF1728at 388.538 kb on - strand, within GFF1728at 388.538 kb on - strand, within GFF1728at 388.575 kb on + strand, within GFF1728at 388.575 kb on + strand, within GFF1728at 388.575 kb on + strand, within GFF1728at 388.576 kb on - strand, within GFF1728at 388.576 kb on - strand, within GFF1728at 388.576 kb on - strand, within GFF1728at 388.576 kb on - strand, within GFF1728at 388.576 kb on - strand, within GFF1728

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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386,153 + -1.7
386,292 + -0.6
386,292 + -2.3
386,292 + +0.3
386,292 + -0.4
386,293 - +0.6
386,293 - -0.1
386,293 - +0.5
386,293 - -1.1
386,293 - -1.6
386,293 - -0.7
386,293 - -0.1
386,293 - +1.0
386,293 - +0.8
386,293 - +0.3
386,293 - -0.5
386,293 - +0.4
386,415 + +1.4
386,415 + -0.7
386,415 + +1.3
386,416 - -0.7
386,436 + -2.4
386,436 + +0.1
386,436 + -0.7
386,437 - +0.2
386,437 - +1.1
386,976 + +0.9
387,116 + -0.2
387,116 + +0.3
387,116 + -0.6
387,117 - -0.4
387,117 - -1.0
387,245 + GFF1727 0.33 -2.2
387,245 + GFF1727 0.33 -1.6
387,245 + GFF1727 0.33 +0.2
387,246 - GFF1727 0.33 -1.3
387,246 - GFF1727 0.33 +0.2
387,246 - GFF1727 0.33 +0.5
387,246 - GFF1727 0.33 -0.2
387,246 - GFF1727 0.33 -0.1
387,246 - GFF1727 0.33 -0.5
387,246 - GFF1727 0.33 -0.4
387,251 + GFF1727 0.34 -0.5
387,252 - GFF1727 0.34 +0.1
387,444 + GFF1727 0.70 +1.1
387,549 - GFF1727 0.90 -1.0
387,682 - +0.2
387,786 + -0.5
387,786 + -0.9
387,786 + +0.1
387,787 - -1.9
388,198 + GFF1728 0.33 +0.7
388,198 + GFF1728 0.33 -1.1
388,198 + GFF1728 0.33 +0.1
388,198 + GFF1728 0.33 -0.2
388,198 + GFF1728 0.33 +0.8
388,198 + GFF1728 0.33 -0.1
388,198 + GFF1728 0.33 +0.6
388,198 + GFF1728 0.33 -1.1
388,198 + GFF1728 0.33 +0.0
388,198 + GFF1728 0.33 +0.3
388,199 - GFF1728 0.33 -1.4
388,199 - GFF1728 0.33 -0.4
388,199 - GFF1728 0.33 -0.6
388,199 - GFF1728 0.33 +0.1
388,199 - GFF1728 0.33 +0.5
388,199 - GFF1728 0.33 +0.1
388,199 - GFF1728 0.33 +0.5
388,199 - GFF1728 0.33 +0.5
388,199 - GFF1728 0.33 -1.0
388,199 - GFF1728 0.33 -0.6
388,199 - GFF1728 0.33 -0.4
388,465 + GFF1728 0.54 -0.8
388,465 + GFF1728 0.54 -0.9
388,465 + GFF1728 0.54 -0.2
388,466 - GFF1728 0.54 -0.9
388,466 - GFF1728 0.54 -0.4
388,466 - GFF1728 0.54 -0.6
388,478 - GFF1728 0.55 -1.0
388,478 - GFF1728 0.55 -1.2
388,498 + GFF1728 0.57 -1.8
388,499 - GFF1728 0.57 +0.3
388,499 - GFF1728 0.57 -0.4
388,499 - GFF1728 0.57 -0.1
388,499 - GFF1728 0.57 +0.2
388,499 - GFF1728 0.57 -1.9
388,499 - GFF1728 0.57 +0.3
388,537 + GFF1728 0.60 +0.2
388,537 + GFF1728 0.60 +0.6
388,537 + GFF1728 0.60 -0.3
388,538 - GFF1728 0.60 -0.8
388,538 - GFF1728 0.60 -1.2
388,575 + GFF1728 0.63 -1.7
388,575 + GFF1728 0.63 +0.1
388,575 + GFF1728 0.63 -1.6
388,576 - GFF1728 0.63 +0.4
388,576 - GFF1728 0.63 -1.2
388,576 - GFF1728 0.63 +0.0
388,576 - GFF1728 0.63 -0.2
388,576 - GFF1728 0.63 -1.2

Or see this region's nucleotide sequence