Strain Fitness in Variovorax sp. SCN45 around GFF1726

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
373,638	+		GFF1725	0.24	+0.6
373,638	+		GFF1725	0.24	+0.2
373,994	+		GFF1725	0.59	+0.5
373,994	+		GFF1725	0.59	-0.1
373,994	+		GFF1725	0.59	-1.1
373,995	-		GFF1725	0.59	-0.4
374,119	-		GFF1725	0.71	-0.7
374,127	+		GFF1725	0.72	+0.7
374,127	+		GFF1725	0.72	+1.7
374,127	+		GFF1725	0.72	+0.8
374,128	-		GFF1725	0.72	-0.5
374,361	+				-0.3
374,484	+				-0.2
374,485	-				-0.8
374,485	-				-1.0
374,541	-				-0.8
374,759	+				+0.0
374,760	-				+1.6
374,825	-				+0.3
375,008	+				-0.4
375,348	+				-1.1
375,348	+				+1.3
375,348	+				+0.3
375,348	+				-0.7
375,349	-				-0.7
375,349	-				+0.5
375,349	-				-0.5
375,372	+				+0.1
375,372	+				-0.7
375,372	+				+1.0
375,372	+				-1.0
375,372	+				-0.1
375,372	+				+0.2
375,372	+				-0.7
375,372	+				+0.5
375,372	+				-0.4
375,373	-				-1.3
375,373	-				+0.9
375,373	-				-1.5
375,373	-				-1.3
375,373	-				-0.3
375,373	-				+0.6
375,373	-				-0.3
375,373	-				-0.3
375,373	-				-1.1
375,373	-				-1.6
375,373	-				-0.1
375,373	-				+0.5
375,373	-				+2.1
375,373	-				-0.4
375,373	-				+1.6
375,373	-				-0.4
375,373	-				-0.1
375,471	+				+0.7
375,471	+				+0.9
375,472	-				-1.0
375,472	-				+2.1
375,472	-				+0.7
376,046	+		GFF1726	0.12	-0.8
376,046	+		GFF1726	0.12	-0.6
376,046	+		GFF1726	0.12	-1.3
376,047	-		GFF1726	0.12	-1.1
376,323	+		GFF1726	0.14	+0.5
376,323	+		GFF1726	0.14	+0.0
376,324	-		GFF1726	0.14	+2.1
376,324	-		GFF1726	0.14	+0.4
376,356	+		GFF1726	0.14	+0.3
376,356	+		GFF1726	0.14	+2.7
376,569	+		GFF1726	0.16	+2.1
376,569	+		GFF1726	0.16	-0.5
376,581	+		GFF1726	0.16	-0.5
376,581	+		GFF1726	0.16	-0.4
376,581	+		GFF1726	0.16	+1.0
376,581	+		GFF1726	0.16	+0.9
376,581	+		GFF1726	0.16	-0.1
376,581	+		GFF1726	0.16	-0.2
376,581	+		GFF1726	0.16	-0.3
376,582	-		GFF1726	0.16	-0.2
376,582	-		GFF1726	0.16	+0.6
376,582	-		GFF1726	0.16	-0.1
376,582	-		GFF1726	0.16	+0.9
376,582	-		GFF1726	0.16	-0.3
376,582	-		GFF1726	0.16	+1.1
376,582	-		GFF1726	0.16	-0.5
376,582	-		GFF1726	0.16	-0.6
376,582	-		GFF1726	0.16	-0.6
376,582	-		GFF1726	0.16	-0.8
376,638	+		GFF1726	0.17	+0.7
376,638	+		GFF1726	0.17	+0.1
376,638	+		GFF1726	0.17	-0.7
376,638	+		GFF1726	0.17	+0.1
376,638	+		GFF1726	0.17	-0.9
376,639	-		GFF1726	0.17	+0.1
376,639	-		GFF1726	0.17	-0.2
376,639	-		GFF1726	0.17	-0.9
376,639	-		GFF1726	0.17	-0.2
376,639	-		GFF1726	0.17	-1.5
376,639	-		GFF1726	0.17	-0.4
376,639	-		GFF1726	0.17	+0.1
376,639	-		GFF1726	0.17	+0.6
376,639	-		GFF1726	0.17	-0.7
376,680	+		GFF1726	0.17	-0.5
376,680	+		GFF1726	0.17	-0.1
376,681	-		GFF1726	0.17	+0.7
376,761	+		GFF1726	0.18	-0.2
376,761	+		GFF1726	0.18	+0.6
376,761	+		GFF1726	0.18	+0.2
376,761	+		GFF1726	0.18	-0.0
376,762	-		GFF1726	0.18	+2.1
376,810	-		GFF1726	0.18	-0.1
376,864	-		GFF1726	0.19	+0.1
376,864	-		GFF1726	0.19	+2.4
376,864	-		GFF1726	0.19	-0.9
376,864	-		GFF1726	0.19	-0.1
376,864	-		GFF1726	0.19	+0.8
376,986	+		GFF1726	0.20	+0.3
376,987	-		GFF1726	0.20	-0.5
376,987	-		GFF1726	0.20	-0.4
376,987	-		GFF1726	0.20	+1.1
376,987	-		GFF1726	0.20	-0.6
377,332	-		GFF1726	0.22	-0.6
377,332	-		GFF1726	0.22	-0.3
377,332	-		GFF1726	0.22	-0.2
377,332	-		GFF1726	0.22	-0.3
377,332	-		GFF1726	0.22	-0.5
377,332	-		GFF1726	0.22	+0.5
377,482	-		GFF1726	0.24	+0.4
377,482	-		GFF1726	0.24	-0.7
377,685	+		GFF1726	0.25	-1.3
377,685	+		GFF1726	0.25	+0.1
377,686	-		GFF1726	0.25	-0.6
377,754	+		GFF1726	0.26	+0.7
377,754	+		GFF1726	0.26	-1.6
377,755	-		GFF1726	0.26	-0.8
377,779	+		GFF1726	0.26	-0.2
377,779	+		GFF1726	0.26	-0.0
377,779	+		GFF1726	0.26	-0.2
377,779	+		GFF1726	0.26	+0.0
377,780	-		GFF1726	0.26	-0.4
377,780	-		GFF1726	0.26	-2.6
377,780	-		GFF1726	0.26	+0.1
377,780	-		GFF1726	0.26	+0.0
377,780	-		GFF1726	0.26	+0.1
377,874	+		GFF1726	0.27	+0.5
377,874	+		GFF1726	0.27	-0.5
377,874	+		GFF1726	0.27	-1.0
377,874	+		GFF1726	0.27	-0.1
377,875	-		GFF1726	0.27	-0.3
377,875	-		GFF1726	0.27	+1.0
377,875	-		GFF1726	0.27	+0.3
377,875	-		GFF1726	0.27	-1.0
378,001	-		GFF1726	0.28	-0.4
378,145	-		GFF1726	0.29	-0.9
378,145	-		GFF1726	0.29	+0.7
378,297	+		GFF1726	0.30	+1.3
378,297	+		GFF1726	0.30	-0.2
378,550	-		GFF1726	0.32	-0.7
378,618	+		GFF1726	0.33	+0.4
378,618	+		GFF1726	0.33	-0.6
378,618	+		GFF1726	0.33	+1.5
378,618	+		GFF1726	0.33	-0.5
378,618	+		GFF1726	0.33	-1.4
378,619	-		GFF1726	0.33	-0.5
378,619	-		GFF1726	0.33	-0.8
378,745	-		GFF1726	0.34	-0.7
378,745	-		GFF1726	0.34	+2.1
378,840	+		GFF1726	0.34	-1.1
378,840	+		GFF1726	0.34	-0.8
378,840	+		GFF1726	0.34	-0.0
378,840	+		GFF1726	0.34	+0.4
378,840	+		GFF1726	0.34	-0.2
378,840	+		GFF1726	0.34	-0.3
378,840	+		GFF1726	0.34	+0.5
378,841	-		GFF1726	0.34	+0.1
378,841	-		GFF1726	0.34	+0.7
378,841	-		GFF1726	0.34	-0.1
378,841	-		GFF1726	0.34	-0.9
378,841	-		GFF1726	0.34	-0.8
378,841	-		GFF1726	0.34	-1.1
378,844	+		GFF1726	0.35	+0.6
378,844	+		GFF1726	0.35	-0.0
378,844	+		GFF1726	0.35	+0.2
378,844	+		GFF1726	0.35	-0.6
378,844	+		GFF1726	0.35	+0.9
378,845	-		GFF1726	0.35	-0.0
378,845	-		GFF1726	0.35	-0.3
378,845	-		GFF1726	0.35	+0.5
378,845	-		GFF1726	0.35	-0.6
378,845	-		GFF1726	0.35	+0.1
378,845	-		GFF1726	0.35	+0.1
378,937	-		GFF1726	0.35	-1.2
378,937	-		GFF1726	0.35	+1.5
378,937	-		GFF1726	0.35	-0.1
379,026	+		GFF1726	0.36	-1.8
379,027	-		GFF1726	0.36	-2.5
379,027	-		GFF1726	0.36	-0.4
379,218	+		GFF1726	0.38	-0.5
379,218	+		GFF1726	0.38	-1.0
379,218	+		GFF1726	0.38	-1.0
379,218	+		GFF1726	0.38	-2.2
379,218	+		GFF1726	0.38	+1.0
379,219	-		GFF1726	0.38	+0.2
379,219	-		GFF1726	0.38	-0.6
379,219	-		GFF1726	0.38	-0.6
379,219	-		GFF1726	0.38	+0.1
379,219	-		GFF1726	0.38	-0.3
379,260	+		GFF1726	0.38	+0.0
379,261	-		GFF1726	0.38	+0.6
379,261	-		GFF1726	0.38	-0.7
379,261	-		GFF1726	0.38	-1.2
379,261	-		GFF1726	0.38	-0.4
379,261	-		GFF1726	0.38	+0.1
379,261	-		GFF1726	0.38	-0.4
379,263	+		GFF1726	0.38	-0.6
379,263	+		GFF1726	0.38	-0.9
379,263	+		GFF1726	0.38	-0.7
379,263	+		GFF1726	0.38	-0.2
379,263	+		GFF1726	0.38	+0.5
379,263	+		GFF1726	0.38	-1.3
379,263	+		GFF1726	0.38	-0.3
379,263	+		GFF1726	0.38	-1.0
379,263	+		GFF1726	0.38	-0.1
379,263	+		GFF1726	0.38	-0.3
379,263	+		GFF1726	0.38	-0.4
379,264	-		GFF1726	0.38	-0.1
379,264	-		GFF1726	0.38	-0.0
379,264	-		GFF1726	0.38	-1.7
379,542	+		GFF1726	0.40	-2.7
379,542	+		GFF1726	0.40	-0.1
379,920	+		GFF1726	0.43	-0.3
379,944	+		GFF1726	0.43	-0.4
379,944	+		GFF1726	0.43	+0.7
379,944	+		GFF1726	0.43	+0.3
379,944	+		GFF1726	0.43	-1.7
379,945	-		GFF1726	0.43	-1.2
379,945	-		GFF1726	0.43	-1.1
380,206	-		GFF1726	0.45	-1.4
380,206	-		GFF1726	0.45	+0.9
380,223	+		GFF1726	0.46	+0.5
380,223	+		GFF1726	0.46	-0.5
380,224	-		GFF1726	0.46	+0.1
380,235	+		GFF1726	0.46	+0.5
380,235	+		GFF1726	0.46	+0.5
380,331	+		GFF1726	0.46	+0.7
380,331	+		GFF1726	0.46	+1.5
380,331	+		GFF1726	0.46	+0.5
380,331	+		GFF1726	0.46	+0.1
380,331	+		GFF1726	0.46	-0.5
380,331	+		GFF1726	0.46	+0.3
380,331	+		GFF1726	0.46	-0.8
380,331	+		GFF1726	0.46	+0.1
380,331	+		GFF1726	0.46	-0.7
380,331	+		GFF1726	0.46	-0.7
380,331	+		GFF1726	0.46	+0.6
380,331	+		GFF1726	0.46	-0.7
380,331	+		GFF1726	0.46	+0.5
380,332	-		GFF1726	0.46	-0.1
380,332	-		GFF1726	0.46	+0.2
380,332	-		GFF1726	0.46	-0.1
380,332	-		GFF1726	0.46	-0.3
380,332	-		GFF1726	0.46	-0.5
380,332	-		GFF1726	0.46	+0.1
380,332	-		GFF1726	0.46	-0.8
380,332	-		GFF1726	0.46	-2.0
380,332	-		GFF1726	0.46	+0.0
380,332	-		GFF1726	0.46	-0.5
380,332	-		GFF1726	0.46	+0.2
380,332	-		GFF1726	0.46	-0.2
380,562	+		GFF1726	0.48	-1.1
380,563	-		GFF1726	0.48	-0.6
380,577	+		GFF1726	0.48	-0.1
380,577	+		GFF1726	0.48	-0.0
380,577	+		GFF1726	0.48	-0.0
380,577	+		GFF1726	0.48	+0.2
380,577	+		GFF1726	0.48	+0.1
380,577	+		GFF1726	0.48	-0.1
380,578	-		GFF1726	0.48	-0.9
380,578	-		GFF1726	0.48	+0.6
380,880	+		GFF1726	0.51	+0.5
380,880	+		GFF1726	0.51	+0.5
380,880	+		GFF1726	0.51	-1.9
380,880	+		GFF1726	0.51	-0.5
380,880	+		GFF1726	0.51	+0.7
380,880	+		GFF1726	0.51	-0.7
380,880	+		GFF1726	0.51	+0.9
380,880	+		GFF1726	0.51	-0.3
380,880	+		GFF1726	0.51	-0.4
380,881	-		GFF1726	0.51	-0.1
380,881	-		GFF1726	0.51	-0.2
380,881	-		GFF1726	0.51	+0.5
380,881	-		GFF1726	0.51	-1.0
380,881	-		GFF1726	0.51	-0.3
380,881	-		GFF1726	0.51	-1.0
380,886	+		GFF1726	0.51	-1.7
380,886	+		GFF1726	0.51	-0.9
380,886	+		GFF1726	0.51	-2.0
380,886	+		GFF1726	0.51	-0.9
380,887	-		GFF1726	0.51	+0.5
380,887	-		GFF1726	0.51	-0.3
380,929	-		GFF1726	0.51	-0.1
380,929	-		GFF1726	0.51	-0.9
381,093	+		GFF1726	0.53	-0.0
381,094	-		GFF1726	0.53	+0.1
381,094	-		GFF1726	0.53	+0.4
381,132	+		GFF1726	0.53	-0.7
381,446	-		GFF1726	0.55	-0.0
381,495	+		GFF1726	0.56	-0.7
381,496	-		GFF1726	0.56	+0.3
381,496	-		GFF1726	0.56	-0.2
381,561	+		GFF1726	0.56	-0.6
381,561	+		GFF1726	0.56	-1.1
381,657	+		GFF1726	0.57	-0.4
381,701	+		GFF1726	0.58	-0.5
381,966	+		GFF1726	0.60	+0.3
382,191	+		GFF1726	0.61	-0.5
382,191	+		GFF1726	0.61	+0.0
382,191	+		GFF1726	0.61	-1.0
382,191	+		GFF1726	0.61	+2.1
382,191	+		GFF1726	0.61	+0.1
382,191	+		GFF1726	0.61	+0.4
382,192	-		GFF1726	0.61	+0.3
382,192	-		GFF1726	0.61	+0.7
382,192	-		GFF1726	0.61	-1.2
382,192	-		GFF1726	0.61	-0.1
382,192	-		GFF1726	0.61	+0.2
382,198	+		GFF1726	0.62	+0.9
382,199	-		GFF1726	0.62	+0.7
382,199	-		GFF1726	0.62	-1.5
382,199	-		GFF1726	0.62	-0.5
382,282	+		GFF1726	0.62	-0.1
382,283	-		GFF1726	0.62	-0.6
382,283	-		GFF1726	0.62	+0.1
382,701	+		GFF1726	0.66	-0.2
382,701	+		GFF1726	0.66	+0.1
382,701	+		GFF1726	0.66	-0.6
382,701	+		GFF1726	0.66	+0.3
382,701	+		GFF1726	0.66	-0.4
382,701	+		GFF1726	0.66	-0.8
382,701	+		GFF1726	0.66	-0.5
382,702	-		GFF1726	0.66	-0.3
382,702	-		GFF1726	0.66	-0.7
382,702	-		GFF1726	0.66	+1.5
382,702	-		GFF1726	0.66	-2.3
382,702	-		GFF1726	0.66	+0.3
382,702	-		GFF1726	0.66	-0.3
382,983	+		GFF1726	0.68	-0.1
383,235	+		GFF1726	0.70	-0.9
383,236	-		GFF1726	0.70	+0.7
383,479	-		GFF1726	0.72	-0.7
383,484	+		GFF1726	0.72	-1.3
383,484	+		GFF1726	0.72	+0.2
383,484	+		GFF1726	0.72	-0.6
383,484	+		GFF1726	0.72	+0.6
383,484	+		GFF1726	0.72	+0.5
383,484	+		GFF1726	0.72	-1.0
383,484	+		GFF1726	0.72	+0.3
383,484	+		GFF1726	0.72	-1.4
383,485	+		GFF1726	0.72	+0.7
383,485	-		GFF1726	0.72	-1.2
383,485	-		GFF1726	0.72	-0.4
383,485	-		GFF1726	0.72	-1.3
383,485	-		GFF1726	0.72	+0.1
383,485	-		GFF1726	0.72	-0.2
383,485	-		GFF1726	0.72	-2.4
383,485	-		GFF1726	0.72	+0.8
383,562	+		GFF1726	0.72	-0.4
383,562	+		GFF1726	0.72	-0.2
383,562	+		GFF1726	0.72	-0.2
383,562	+		GFF1726	0.72	-0.1
383,562	+		GFF1726	0.72	-1.0
383,562	+		GFF1726	0.72	-0.1
383,562	+		GFF1726	0.72	+0.5
383,562	+		GFF1726	0.72	+0.8
383,563	-		GFF1726	0.72	-0.4
383,563	-		GFF1726	0.72	+0.0
383,563	-		GFF1726	0.72	-0.3
383,563	-		GFF1726	0.72	-0.7
383,563	-		GFF1726	0.72	+0.3
383,563	-		GFF1726	0.72	+1.1
383,563	-		GFF1726	0.72	-0.4
383,563	-		GFF1726	0.72	+0.6
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