Strain Fitness in Variovorax sp. SCN45 around GFF1701

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1700 and GFF1701 are separated by 92 nucleotidesGFF1701 and GFF1702 are separated by 170 nucleotides GFF1700 - hypothetical protein, at 346,188 to 347,210 GFF1700 GFF1701 - BUG/TctC family periplasmic protein, at 347,303 to 348,307 GFF1701 GFF1702 - hypothetical protein, at 348,478 to 349,164 GFF1702 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 346.383 kb on + strand, within GFF1700at 346.523 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.525 kb on + strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.526 kb on - strand, within GFF1700at 346.765 kb on + strand, within GFF1700at 346.766 kb on - strand, within GFF1700at 346.766 kb on - strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.783 kb on + strand, within GFF1700at 346.784 kb on - strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.972 kb on + strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.973 kb on - strand, within GFF1700at 346.981 kb on + strand, within GFF1700at 346.982 kb on - strand, within GFF1700at 346.999 kb on + strand, within GFF1700at 346.999 kb on + strand, within GFF1700at 347.000 kb on - strand, within GFF1700at 347.083 kb on + strand, within GFF1700at 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.122 kb on + strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.123 kb on - strandat 347.164 kb on + strandat 347.164 kb on + strandat 347.164 kb on + strandat 347.165 kb on - strandat 347.165 kb on - strandat 347.165 kb on - strandat 347.165 kb on - strandat 347.309 kb on + strandat 347.310 kb on - strandat 347.310 kb on - strandat 347.310 kb on - strandat 347.310 kb on - strandat 347.310 kb on - strandat 347.724 kb on + strand, within GFF1701at 347.724 kb on + strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.725 kb on - strand, within GFF1701at 347.811 kb on + strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.812 kb on - strand, within GFF1701at 347.841 kb on + strand, within GFF1701at 347.841 kb on + strand, within GFF1701at 347.842 kb on - strand, within GFF1701at 347.842 kb on - strand, within GFF1701at 347.895 kb on + strand, within GFF1701at 347.895 kb on + strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.896 kb on - strand, within GFF1701at 347.949 kb on + strand, within GFF1701at 347.949 kb on + strand, within GFF1701at 347.950 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 347.965 kb on - strand, within GFF1701at 348.013 kb on + strand, within GFF1701at 348.014 kb on - strand, within GFF1701at 348.014 kb on - strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.015 kb on + strand, within GFF1701at 348.016 kb on - strand, within GFF1701at 348.016 kb on - strand, within GFF1701at 348.465 kb on + strandat 348.465 kb on + strandat 348.466 kb on - strandat 348.466 kb on - strandat 348.466 kb on - strandat 348.467 kb on + strandat 348.467 kb on + strandat 348.467 kb on + strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.468 kb on - strandat 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.751 kb on + strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 348.752 kb on - strand, within GFF1702at 349.162 kb on + strandat 349.162 kb on + strandat 349.162 kb on + strandat 349.163 kb on - strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.297 kb on + strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strandat 349.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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346,383 + GFF1700 0.19 -0.1
346,523 + GFF1700 0.33 -0.3
346,525 + GFF1700 0.33 -0.6
346,525 + GFF1700 0.33 +0.0
346,525 + GFF1700 0.33 +0.4
346,526 - GFF1700 0.33 +0.2
346,526 - GFF1700 0.33 -0.1
346,526 - GFF1700 0.33 -0.8
346,526 - GFF1700 0.33 -0.3
346,526 - GFF1700 0.33 +0.4
346,526 - GFF1700 0.33 -0.4
346,526 - GFF1700 0.33 +0.1
346,765 + GFF1700 0.56 -1.2
346,766 - GFF1700 0.57 -0.5
346,766 - GFF1700 0.57 +0.6
346,783 + GFF1700 0.58 +0.3
346,783 + GFF1700 0.58 -0.4
346,783 + GFF1700 0.58 +0.1
346,784 - GFF1700 0.58 +0.0
346,972 + GFF1700 0.77 -0.3
346,972 + GFF1700 0.77 -0.9
346,972 + GFF1700 0.77 +0.6
346,972 + GFF1700 0.77 +0.1
346,972 + GFF1700 0.77 +0.2
346,972 + GFF1700 0.77 -1.3
346,972 + GFF1700 0.77 +0.1
346,972 + GFF1700 0.77 +0.6
346,972 + GFF1700 0.77 -0.4
346,972 + GFF1700 0.77 -1.5
346,972 + GFF1700 0.77 +0.2
346,972 + GFF1700 0.77 +0.8
346,972 + GFF1700 0.77 -0.9
346,972 + GFF1700 0.77 +0.4
346,972 + GFF1700 0.77 -0.2
346,972 + GFF1700 0.77 +0.6
346,972 + GFF1700 0.77 -0.4
346,972 + GFF1700 0.77 -0.6
346,973 - GFF1700 0.77 -0.5
346,973 - GFF1700 0.77 +0.7
346,973 - GFF1700 0.77 -0.3
346,973 - GFF1700 0.77 -0.4
346,973 - GFF1700 0.77 +0.1
346,973 - GFF1700 0.77 -0.5
346,973 - GFF1700 0.77 +0.6
346,973 - GFF1700 0.77 +0.9
346,973 - GFF1700 0.77 +0.5
346,981 + GFF1700 0.78 +0.1
346,982 - GFF1700 0.78 -1.2
346,999 + GFF1700 0.79 +0.5
346,999 + GFF1700 0.79 -0.3
347,000 - GFF1700 0.79 +3.4
347,083 + GFF1700 0.87 +0.2
347,122 + +0.5
347,122 + -0.9
347,122 + +0.4
347,122 + -2.5
347,122 + +0.7
347,122 + +0.5
347,122 + -0.4
347,122 + -0.1
347,122 + -0.3
347,123 - -0.3
347,123 - +0.4
347,123 - +0.1
347,123 - -0.5
347,123 - +1.3
347,123 - -1.8
347,123 - -0.6
347,164 + -0.0
347,164 + -1.0
347,164 + -0.6
347,165 - +0.7
347,165 - +0.3
347,165 - -0.3
347,165 - -0.3
347,309 + -1.6
347,310 - +0.6
347,310 - +0.1
347,310 - -1.1
347,310 - +0.1
347,310 - +1.5
347,724 + GFF1701 0.42 +0.0
347,724 + GFF1701 0.42 -0.4
347,725 - GFF1701 0.42 -1.2
347,725 - GFF1701 0.42 -0.4
347,725 - GFF1701 0.42 -1.0
347,725 - GFF1701 0.42 +0.7
347,725 - GFF1701 0.42 -1.4
347,811 + GFF1701 0.51 +1.3
347,812 - GFF1701 0.51 +0.2
347,812 - GFF1701 0.51 -0.3
347,812 - GFF1701 0.51 +0.4
347,812 - GFF1701 0.51 -1.3
347,841 + GFF1701 0.54 +0.5
347,841 + GFF1701 0.54 -0.4
347,842 - GFF1701 0.54 -0.5
347,842 - GFF1701 0.54 -2.3
347,895 + GFF1701 0.59 -1.8
347,895 + GFF1701 0.59 -1.0
347,896 - GFF1701 0.59 +0.8
347,896 - GFF1701 0.59 +0.6
347,896 - GFF1701 0.59 -1.1
347,896 - GFF1701 0.59 -0.8
347,949 + GFF1701 0.64 +0.1
347,949 + GFF1701 0.64 -0.4
347,950 - GFF1701 0.64 -0.3
347,965 - GFF1701 0.66 -0.6
347,965 - GFF1701 0.66 -1.2
347,965 - GFF1701 0.66 -0.8
348,013 + GFF1701 0.71 -0.5
348,014 - GFF1701 0.71 +0.3
348,014 - GFF1701 0.71 -0.5
348,015 + GFF1701 0.71 +1.4
348,015 + GFF1701 0.71 -0.8
348,015 + GFF1701 0.71 -1.0
348,015 + GFF1701 0.71 -3.2
348,015 + GFF1701 0.71 -0.5
348,016 - GFF1701 0.71 -0.1
348,016 - GFF1701 0.71 -0.5
348,465 + +0.3
348,465 + +2.1
348,466 - -0.3
348,466 - +0.7
348,466 - -0.7
348,467 + +0.3
348,467 + -0.5
348,467 + +0.6
348,468 - +0.7
348,468 - -0.1
348,468 - -0.3
348,468 - +0.2
348,751 + GFF1702 0.40 -0.7
348,751 + GFF1702 0.40 +1.1
348,751 + GFF1702 0.40 -1.3
348,751 + GFF1702 0.40 -1.2
348,751 + GFF1702 0.40 +0.1
348,751 + GFF1702 0.40 -1.0
348,751 + GFF1702 0.40 +0.4
348,751 + GFF1702 0.40 +0.1
348,751 + GFF1702 0.40 -0.5
348,751 + GFF1702 0.40 -0.2
348,751 + GFF1702 0.40 +0.3
348,751 + GFF1702 0.40 -0.8
348,751 + GFF1702 0.40 -1.3
348,752 - GFF1702 0.40 +0.2
348,752 - GFF1702 0.40 -0.5
348,752 - GFF1702 0.40 +0.1
348,752 - GFF1702 0.40 +0.2
348,752 - GFF1702 0.40 +0.1
348,752 - GFF1702 0.40 +1.1
348,752 - GFF1702 0.40 +0.5
348,752 - GFF1702 0.40 +0.7
348,752 - GFF1702 0.40 -0.5
348,752 - GFF1702 0.40 +0.5
349,162 + -1.6
349,162 + +0.6
349,162 + -0.7
349,163 - +0.6
349,297 + -0.9
349,297 + +1.4
349,297 + -0.3
349,297 + -1.5
349,297 + -0.1
349,297 + -0.0
349,297 + -0.1
349,297 + +0.3
349,298 - -0.3
349,298 - -1.3
349,298 - +0.7
349,298 - -1.1
349,298 - +1.1
349,298 - +1.1

Or see this region's nucleotide sequence