Strain Fitness in Variovorax sp. SCN45 around GFF1425

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
15,292	+				+0.7
15,292	+				-1.5
15,293	-				-1.4
15,764	+		GFF1424	0.50	-1.2
15,764	+		GFF1424	0.50	-0.8
15,765	-		GFF1424	0.51	+0.6
15,765	-		GFF1424	0.51	-0.9
15,765	-		GFF1424	0.51	+0.5
15,818	+		GFF1424	0.56	-0.8
15,818	+		GFF1424	0.56	-0.6
15,818	+		GFF1424	0.56	-0.3
15,818	+		GFF1424	0.56	+1.7
15,968	+		GFF1424	0.72	-0.3
15,968	+		GFF1424	0.72	-0.2
15,969	-		GFF1424	0.72	+0.7
15,969	-		GFF1424	0.72	-0.2
16,125	-		GFF1424	0.89	+0.2
16,125	-		GFF1424	0.89	-0.5
16,235	+				+0.5
16,236	-				+0.6
16,236	-				-0.5
16,988	+				-0.2
17,351	+		GFF1426	0.51	-0.1
17,352	-		GFF1426	0.51	-0.1
17,352	-		GFF1426	0.51	+0.5
17,352	-		GFF1426	0.51	-0.9
17,352	-		GFF1426	0.51	-0.0
17,612	+		GFF1426	0.87	+0.2
17,612	+		GFF1426	0.87	+0.8
17,612	+		GFF1426	0.87	+0.3
17,613	-		GFF1426	0.87	+0.1
17,690	+				+1.3
17,690	+				-0.9
17,822	-		GFF1427	0.10	+0.1
17,859	+		GFF1427	0.14	-0.3
17,859	+		GFF1427	0.14	-0.0
17,860	-		GFF1427	0.14	+2.0
17,860	-		GFF1427	0.14	-0.9
17,860	-		GFF1427	0.14	+0.4
17,872	-		GFF1427	0.15	-0.5
17,967	+		GFF1427	0.24	+0.0
17,968	-		GFF1427	0.24	-0.5