Strain Fitness in Variovorax sp. SCN45 around GFF1284

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1282 and GFF1283 are separated by 68 nucleotidesGFF1283 and GFF1284 are separated by 134 nucleotidesGFF1284 and GFF1285 are separated by 114 nucleotidesGFF1285 and GFF1286 are separated by 21 nucleotides GFF1282 - Chromate reductase (EC 1.6.5.2), at 610,624 to 611,178 GFF1282 GFF1283 - FMN-dependent NADH-azoreductase (EC 1.7.1.6), at 611,247 to 611,894 GFF1283 GFF1284 - Transcriptional regulator, LysR family, at 612,029 to 612,943 GFF1284 GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699 GFF1285 GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296 GFF1286 Position (kb) 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.146 kb on + strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.147 kb on - strandat 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.419 kb on + strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.420 kb on - strand, within GFF1283at 611.464 kb on + strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.465 kb on - strand, within GFF1283at 611.536 kb on + strand, within GFF1283at 611.537 kb on - strand, within GFF1283at 611.537 kb on - strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.608 kb on + strand, within GFF1283at 611.609 kb on - strand, within GFF1283at 611.779 kb on + strand, within GFF1283at 611.779 kb on + strand, within GFF1283at 611.780 kb on - strand, within GFF1283at 611.979 kb on - strandat 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.221 kb on + strand, within GFF1284at 612.222 kb on - strand, within GFF1284at 612.423 kb on + strand, within GFF1284at 612.512 kb on + strand, within GFF1284at 612.513 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.693 kb on - strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.764 kb on + strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.765 kb on - strand, within GFF1284at 612.977 kb on + strandat 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.130 kb on + strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.131 kb on - strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.382 kb on + strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.383 kb on - strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.433 kb on + strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.434 kb on - strand, within GFF1285at 613.475 kb on + strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.476 kb on - strand, within GFF1285at 613.667 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.697 kb on + strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strandat 613.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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611,146 + +0.6
611,146 + -2.6
611,146 + -0.8
611,146 + -1.4
611,146 + -1.2
611,146 + -0.1
611,146 + +0.1
611,146 + +1.8
611,146 + +0.0
611,146 + +0.8
611,146 + +0.8
611,146 + +0.9
611,146 + +0.1
611,146 + -1.4
611,146 + -0.7
611,146 + +1.5
611,147 - +0.4
611,147 - -0.5
611,147 - +0.2
611,147 - -0.7
611,147 - +1.3
611,147 - -0.2
611,419 + GFF1283 0.27 -0.5
611,419 + GFF1283 0.27 -0.6
611,419 + GFF1283 0.27 +0.2
611,419 + GFF1283 0.27 +0.2
611,419 + GFF1283 0.27 -0.6
611,419 + GFF1283 0.27 -1.2
611,419 + GFF1283 0.27 -0.9
611,419 + GFF1283 0.27 -0.1
611,419 + GFF1283 0.27 +1.2
611,420 - GFF1283 0.27 +0.5
611,420 - GFF1283 0.27 -1.2
611,420 - GFF1283 0.27 -0.8
611,420 - GFF1283 0.27 +0.1
611,420 - GFF1283 0.27 -0.8
611,420 - GFF1283 0.27 -0.7
611,464 + GFF1283 0.33 -0.5
611,465 - GFF1283 0.34 -0.4
611,465 - GFF1283 0.34 +0.9
611,465 - GFF1283 0.34 +1.0
611,536 + GFF1283 0.45 +0.8
611,537 - GFF1283 0.45 -0.5
611,537 - GFF1283 0.45 +0.9
611,608 + GFF1283 0.56 -0.5
611,608 + GFF1283 0.56 -0.0
611,608 + GFF1283 0.56 -0.2
611,608 + GFF1283 0.56 -0.1
611,608 + GFF1283 0.56 -1.3
611,608 + GFF1283 0.56 -2.9
611,609 - GFF1283 0.56 -1.2
611,779 + GFF1283 0.82 -0.7
611,779 + GFF1283 0.82 +0.1
611,780 - GFF1283 0.82 +0.3
611,979 - -2.1
612,221 + GFF1284 0.21 +0.4
612,221 + GFF1284 0.21 +0.6
612,221 + GFF1284 0.21 -0.4
612,221 + GFF1284 0.21 +0.6
612,221 + GFF1284 0.21 -0.7
612,221 + GFF1284 0.21 +0.7
612,221 + GFF1284 0.21 -0.4
612,221 + GFF1284 0.21 +0.0
612,222 - GFF1284 0.21 -0.1
612,423 + GFF1284 0.43 +0.5
612,512 + GFF1284 0.53 +0.3
612,513 - GFF1284 0.53 -0.2
612,693 - GFF1284 0.73 -0.7
612,693 - GFF1284 0.73 -0.9
612,764 + GFF1284 0.80 +0.9
612,764 + GFF1284 0.80 +1.9
612,764 + GFF1284 0.80 -0.0
612,764 + GFF1284 0.80 +0.4
612,764 + GFF1284 0.80 -0.3
612,764 + GFF1284 0.80 +0.9
612,764 + GFF1284 0.80 +1.6
612,765 - GFF1284 0.80 +1.1
612,765 - GFF1284 0.80 -0.1
612,765 - GFF1284 0.80 -0.4
612,765 - GFF1284 0.80 +1.6
612,765 - GFF1284 0.80 -0.9
612,765 - GFF1284 0.80 -0.8
612,765 - GFF1284 0.80 +0.6
612,765 - GFF1284 0.80 +0.0
612,977 + -1.1
613,130 + GFF1285 0.11 +0.0
613,130 + GFF1285 0.11 -0.4
613,130 + GFF1285 0.11 -0.1
613,131 - GFF1285 0.11 -0.7
613,131 - GFF1285 0.11 -1.1
613,131 - GFF1285 0.11 -1.6
613,131 - GFF1285 0.11 -0.5
613,382 + GFF1285 0.50 -0.4
613,382 + GFF1285 0.50 -0.2
613,382 + GFF1285 0.50 +0.0
613,382 + GFF1285 0.50 -1.1
613,382 + GFF1285 0.50 -0.8
613,383 - GFF1285 0.51 -0.5
613,383 - GFF1285 0.51 +0.6
613,383 - GFF1285 0.51 +1.1
613,383 - GFF1285 0.51 +0.2
613,433 + GFF1285 0.58 -1.6
613,433 + GFF1285 0.58 -0.8
613,433 + GFF1285 0.58 -0.4
613,434 - GFF1285 0.59 +1.4
613,434 - GFF1285 0.59 -1.0
613,434 - GFF1285 0.59 +0.4
613,475 + GFF1285 0.65 -0.0
613,476 - GFF1285 0.65 -0.4
613,476 - GFF1285 0.65 -1.2
613,667 + -0.2
613,697 + -0.9
613,697 + -0.2
613,697 + -0.2
613,697 + -0.4
613,697 + -0.9
613,697 + +0.1
613,698 - -0.1
613,698 - -0.2
613,698 - +0.2
613,698 - -1.8
613,698 - +0.3
613,698 - +0.2
613,698 - -1.4
613,698 - -0.9
613,698 - -0.3
613,698 - +0.5
613,698 - +0.1

Or see this region's nucleotide sequence