Strain Fitness in Variovorax sp. SCN45 around GFF119

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF118 and GFF119 overlap by 4 nucleotidesGFF119 and GFF120 are separated by 228 nucleotides GFF118 - putative membrane protein, at 145,553 to 146,578 GFF118 GFF119 - FIG00348677: hypothetical protein, at 146,575 to 148,503 GFF119 GFF120 - Two-component transcriptional response regulator, LuxR family, at 148,732 to 149,274 GFF120 Position (kb) 146 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 145.643 kb on + strandat 145.644 kb on - strandat 145.674 kb on + strand, within GFF118at 145.674 kb on + strand, within GFF118at 145.675 kb on - strand, within GFF118at 145.675 kb on - strand, within GFF118at 145.675 kb on - strand, within GFF118at 145.675 kb on - strand, within GFF118at 145.675 kb on - strand, within GFF118at 145.761 kb on - strand, within GFF118at 145.926 kb on - strand, within GFF118at 145.953 kb on - strand, within GFF118at 145.995 kb on - strand, within GFF118at 145.995 kb on - strand, within GFF118at 145.995 kb on - strand, within GFF118at 146.204 kb on + strand, within GFF118at 146.204 kb on + strand, within GFF118at 146.204 kb on + strand, within GFF118at 146.204 kb on + strand, within GFF118at 146.204 kb on + strand, within GFF118at 146.205 kb on - strand, within GFF118at 146.205 kb on - strand, within GFF118at 146.205 kb on - strand, within GFF118at 146.210 kb on + strand, within GFF118at 146.210 kb on + strand, within GFF118at 146.210 kb on + strand, within GFF118at 146.211 kb on - strand, within GFF118at 146.211 kb on - strand, within GFF118at 146.300 kb on + strand, within GFF118at 146.400 kb on - strand, within GFF118at 146.411 kb on + strand, within GFF118at 146.411 kb on + strand, within GFF118at 146.418 kb on - strand, within GFF118at 146.681 kb on - strandat 146.966 kb on - strand, within GFF119at 146.972 kb on - strand, within GFF119at 146.972 kb on - strand, within GFF119at 147.043 kb on + strand, within GFF119at 147.043 kb on + strand, within GFF119at 147.044 kb on - strand, within GFF119at 147.044 kb on - strand, within GFF119at 147.044 kb on - strand, within GFF119at 147.049 kb on + strand, within GFF119at 147.050 kb on - strand, within GFF119at 147.050 kb on - strand, within GFF119at 147.088 kb on + strand, within GFF119at 147.317 kb on - strand, within GFF119at 147.364 kb on - strand, within GFF119at 147.601 kb on + strand, within GFF119at 147.601 kb on + strand, within GFF119at 147.728 kb on - strand, within GFF119at 147.728 kb on - strand, within GFF119at 147.745 kb on + strand, within GFF119at 147.745 kb on + strand, within GFF119at 147.745 kb on + strand, within GFF119at 147.745 kb on + strand, within GFF119at 147.745 kb on + strand, within GFF119at 147.746 kb on - strand, within GFF119at 147.949 kb on + strand, within GFF119at 148.360 kb on + strandat 148.583 kb on + strandat 148.584 kb on - strandat 148.584 kb on - strandat 148.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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145,643 + -1.4
145,644 - +0.1
145,674 + GFF118 0.12 -0.4
145,674 + GFF118 0.12 +0.0
145,675 - GFF118 0.12 -0.4
145,675 - GFF118 0.12 +1.0
145,675 - GFF118 0.12 +0.6
145,675 - GFF118 0.12 -0.4
145,675 - GFF118 0.12 -1.1
145,761 - GFF118 0.20 -0.6
145,926 - GFF118 0.36 -2.0
145,953 - GFF118 0.39 +0.0
145,995 - GFF118 0.43 +0.8
145,995 - GFF118 0.43 -1.4
145,995 - GFF118 0.43 +0.4
146,204 + GFF118 0.63 +0.0
146,204 + GFF118 0.63 -0.5
146,204 + GFF118 0.63 -1.2
146,204 + GFF118 0.63 -1.4
146,204 + GFF118 0.63 -0.6
146,205 - GFF118 0.64 -0.4
146,205 - GFF118 0.64 +0.9
146,205 - GFF118 0.64 -0.7
146,210 + GFF118 0.64 -0.1
146,210 + GFF118 0.64 +0.3
146,210 + GFF118 0.64 +0.0
146,211 - GFF118 0.64 +1.6
146,211 - GFF118 0.64 -0.7
146,300 + GFF118 0.73 -1.6
146,400 - GFF118 0.83 -0.3
146,411 + GFF118 0.84 -0.5
146,411 + GFF118 0.84 -0.3
146,418 - GFF118 0.84 -0.7
146,681 - -0.3
146,966 - GFF119 0.20 +2.0
146,972 - GFF119 0.21 +0.1
146,972 - GFF119 0.21 +0.6
147,043 + GFF119 0.24 -0.1
147,043 + GFF119 0.24 -0.3
147,044 - GFF119 0.24 +2.3
147,044 - GFF119 0.24 -0.8
147,044 - GFF119 0.24 +0.5
147,049 + GFF119 0.25 -0.2
147,050 - GFF119 0.25 +0.1
147,050 - GFF119 0.25 -0.7
147,088 + GFF119 0.27 -0.3
147,317 - GFF119 0.38 +0.2
147,364 - GFF119 0.41 -0.3
147,601 + GFF119 0.53 +0.4
147,601 + GFF119 0.53 +0.4
147,728 - GFF119 0.60 -0.9
147,728 - GFF119 0.60 -0.2
147,745 + GFF119 0.61 +1.6
147,745 + GFF119 0.61 -0.6
147,745 + GFF119 0.61 -1.5
147,745 + GFF119 0.61 +1.0
147,745 + GFF119 0.61 -1.1
147,746 - GFF119 0.61 -0.3
147,949 + GFF119 0.71 +1.2
148,360 + +0.0
148,583 + -1.0
148,584 - +0.4
148,584 - +0.3
148,584 - -0.9

Or see this region's nucleotide sequence