Strain Fitness in Variovorax sp. SCN45 around GFF9

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
6,934	+		GFF8	0.57	-0.5
6,935	-		GFF8	0.57	-0.7
7,139	-		GFF8	0.70	+0.1
7,238	-		GFF8	0.77	-0.4
7,477	+				-0.7
7,477	+				-0.7
7,477	+				+0.2
7,478	-				-0.5
7,478	-				+0.9
7,478	-				+0.7
7,478	-				-0.5
7,478	-				+0.3
7,510	+				+0.9
7,510	+				-0.3
7,510	+				+0.1
7,511	-				+1.5
7,934	-		GFF9	0.10	-1.9
8,092	+		GFF9	0.16	-0.9
8,093	-		GFF9	0.16	+1.1
8,243	+		GFF9	0.20	-0.5
8,244	-		GFF9	0.20	+1.5
8,244	-		GFF9	0.20	+0.1
8,453	+		GFF9	0.27	+0.8
8,454	-		GFF9	0.27	-0.2
8,454	-		GFF9	0.27	-0.5
8,454	-		GFF9	0.27	+1.5
8,471	+		GFF9	0.28	-0.4
8,472	-		GFF9	0.28	-0.9
8,472	-		GFF9	0.28	-1.0
8,589	+		GFF9	0.32	+0.1
8,693	+		GFF9	0.35	-1.4
8,693	+		GFF9	0.35	+0.5
8,694	-		GFF9	0.35	+0.2
8,694	-		GFF9	0.35	-0.1
8,770	+		GFF9	0.37	+0.1
8,770	+		GFF9	0.37	+0.2
8,771	-		GFF9	0.37	+0.1
8,771	-		GFF9	0.37	-0.6
8,771	-		GFF9	0.37	+2.6
8,771	-		GFF9	0.37	-0.1
8,771	-		GFF9	0.37	+1.5
8,856	-		GFF9	0.40	+0.6
8,942	+		GFF9	0.43	+1.0
8,942	+		GFF9	0.43	-0.7
8,942	+		GFF9	0.43	+1.0
8,942	+		GFF9	0.43	+0.1
8,942	+		GFF9	0.43	+0.5
8,943	-		GFF9	0.43	-0.4
8,943	-		GFF9	0.43	+0.3
8,943	-		GFF9	0.43	+1.0
9,134	+		GFF9	0.49	+0.2
9,245	+		GFF9	0.53	+0.1
9,246	-		GFF9	0.53	-0.9
9,246	-		GFF9	0.53	+0.3
9,246	-		GFF9	0.53	+0.0
9,299	+		GFF9	0.54	-0.1
9,299	+		GFF9	0.54	+0.4
9,299	+		GFF9	0.54	-1.2
9,300	-		GFF9	0.55	+0.2
9,300	-		GFF9	0.55	+2.0
9,368	+		GFF9	0.57	-0.3
9,749	+		GFF9	0.69	-0.9
9,750	-		GFF9	0.69	+2.0
9,750	-		GFF9	0.69	+0.0
9,750	-		GFF9	0.69	-0.4
9,750	-		GFF9	0.69	+0.5
9,750	-		GFF9	0.69	+0.3
9,842	+		GFF9	0.72	+0.4
9,843	-		GFF9	0.72	-0.9
10,034	+		GFF9	0.78	+0.0
10,034	+		GFF9	0.78	+0.1
10,034	+		GFF9	0.78	-0.4
10,034	+		GFF9	0.78	-0.5
10,035	-		GFF9	0.78	+0.3
10,035	-		GFF9	0.78	+0.1
10,035	-		GFF9	0.78	+0.2
10,035	-		GFF9	0.78	+1.5
10,124	+		GFF9	0.81	+0.2
10,124	+		GFF9	0.81	-0.3
10,289	+		GFF9	0.86	-1.1
10,290	-		GFF9	0.86	-1.0
10,295	+		GFF9	0.87	+0.5
10,295	+		GFF9	0.87	+0.6
10,296	-		GFF9	0.87	+0.7
10,296	-		GFF9	0.87	+0.8
10,397	+		GFF9	0.90	-0.4
10,397	+		GFF9	0.90	-0.8
10,398	-				-0.5
10,592	+				-0.2
10,592	+				-0.4
10,701	+				-0.6
10,701	+				-0.9
10,929	+		GFF10	0.20	-0.6
10,929	+		GFF10	0.20	-0.8
10,929	+		GFF10	0.20	-0.4
10,929	+		GFF10	0.20	-0.7
10,929	+		GFF10	0.20	-0.1
10,929	+		GFF10	0.20	-0.2
10,929	+		GFF10	0.20	+0.8
10,929	+		GFF10	0.20	-0.1
10,929	+		GFF10	0.20	+1.0
10,930	-		GFF10	0.20	-0.3
10,930	-		GFF10	0.20	-1.2
10,930	-		GFF10	0.20	-0.1
10,930	-		GFF10	0.20	+0.1
10,930	-		GFF10	0.20	+1.5
10,930	-		GFF10	0.20	+0.3
10,930	-		GFF10	0.20	+1.2
10,930	-		GFF10	0.20	+0.6
10,930	-		GFF10	0.20	-1.7
11,597	+		GFF10	0.78	+0.7
11,597	+		GFF10	0.78	+1.2
11,598	-		GFF10	0.78	-0.2
11,598	-		GFF10	0.78	-1.1