Strain Fitness in Variovorax sp. SCN45 around GFF79

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
95,439	-		GFF78	0.35	+0.7
96,206	+				-2.1
96,206	+				+0.4
96,278	+				-0.1
96,278	+				+0.4
96,279	-				+0.3
96,279	-				+2.5
96,279	-				-0.6
96,458	-				-0.0
96,540	+				-0.0
96,570	+				-2.0
96,570	+				+1.1
96,571	-				-1.1
96,624	-				+0.3
96,672	+				-0.9
96,673	-				+1.5
96,701	+		GFF80	0.11	-1.4
96,702	-		GFF80	0.12	-0.0
96,846	+		GFF80	0.20	-0.2
96,847	-		GFF80	0.20	+0.3
96,847	-		GFF80	0.20	-0.6
96,847	-		GFF80	0.20	-0.8
96,909	+		GFF80	0.24	-1.1
96,910	-		GFF80	0.24	-1.4
96,910	-		GFF80	0.24	+0.9
97,039	-		GFF80	0.32	+0.2
97,203	+		GFF80	0.42	-0.5
97,203	+		GFF80	0.42	+0.8
97,203	+		GFF80	0.42	-0.1
97,203	+		GFF80	0.42	-0.4
97,203	+		GFF80	0.42	-0.9
97,204	-		GFF80	0.42	-0.2
97,204	-		GFF80	0.42	+1.2
97,206	+		GFF80	0.42	+0.3
97,207	-		GFF80	0.42	+0.8