Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7387 and GFF7388 are separated by 6 nucleotides GFF7388 and GFF7389 are separated by 107 nucleotides GFF7389 and GFF7390 are separated by 9 nucleotides
GFF7387 - no description, at 5,363 to 5,500
GFF7387
GFF7388 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,507 to 6,259
GFF7388
GFF7389 - Cyclohexanone monooxygenase (EC 1.14.13.22), at 6,367 to 7,797
GFF7389
GFF7390 - Aldehyde dehydrogenase (EC 1.2.1.3), at 7,807 to 9,300
GFF7390
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1
2
3 at 5.476 kb on + strand, within GFF7387 at 5.498 kb on + strand at 5.498 kb on + strand at 5.499 kb on - strand at 5.712 kb on + strand, within GFF7388 at 5.712 kb on + strand, within GFF7388 at 5.822 kb on + strand, within GFF7388 at 5.888 kb on - strand, within GFF7388 at 5.960 kb on + strand, within GFF7388 at 6.061 kb on - strand, within GFF7388 at 6.562 kb on + strand, within GFF7389 at 6.562 kb on + strand, within GFF7389 at 6.563 kb on - strand, within GFF7389 at 6.569 kb on - strand, within GFF7389 at 6.587 kb on - strand, within GFF7389 at 6.631 kb on + strand, within GFF7389 at 6.632 kb on - strand, within GFF7389 at 6.632 kb on - strand, within GFF7389 at 6.633 kb on + strand, within GFF7389 at 6.634 kb on - strand, within GFF7389 at 6.634 kb on - strand, within GFF7389 at 6.634 kb on - strand, within GFF7389 at 6.655 kb on + strand, within GFF7389 at 6.656 kb on - strand, within GFF7389 at 6.656 kb on - strand, within GFF7389 at 6.656 kb on - strand, within GFF7389 at 6.789 kb on + strand, within GFF7389 at 6.994 kb on + strand, within GFF7389 at 6.995 kb on - strand, within GFF7389 at 7.133 kb on - strand, within GFF7389 at 7.489 kb on + strand, within GFF7389 at 7.489 kb on + strand, within GFF7389 at 7.525 kb on + strand, within GFF7389 at 7.525 kb on + strand, within GFF7389 at 7.525 kb on + strand, within GFF7389 at 7.550 kb on - strand, within GFF7389 at 7.550 kb on - strand, within GFF7389 at 7.628 kb on - strand, within GFF7389 at 7.690 kb on + strand at 7.690 kb on + strand at 7.726 kb on + strand at 7.898 kb on - strand at 7.898 kb on - strand at 8.150 kb on + strand, within GFF7390 at 8.150 kb on + strand, within GFF7390 at 8.151 kb on - strand, within GFF7390 at 8.151 kb on - strand, within GFF7390 at 8.241 kb on + strand, within GFF7390 at 8.242 kb on - strand, within GFF7390 at 8.242 kb on - strand, within GFF7390 at 8.503 kb on + strand, within GFF7390 at 8.503 kb on + strand, within GFF7390 at 8.504 kb on - strand, within GFF7390 at 8.657 kb on + strand, within GFF7390 at 8.763 kb on + strand, within GFF7390
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 5,476 + GFF7387 0.82 +1.6 5,498 + +0.0 5,498 + +0.8 5,499 - -0.0 5,712 + GFF7388 0.27 +0.8 5,712 + GFF7388 0.27 -0.9 5,822 + GFF7388 0.42 +0.1 5,888 - GFF7388 0.51 -0.8 5,960 + GFF7388 0.60 -0.2 6,061 - GFF7388 0.74 +0.8 6,562 + GFF7389 0.14 +0.3 6,562 + GFF7389 0.14 -1.4 6,563 - GFF7389 0.14 -0.5 6,569 - GFF7389 0.14 +0.4 6,587 - GFF7389 0.15 -0.0 6,631 + GFF7389 0.18 +0.4 6,632 - GFF7389 0.19 +0.0 6,632 - GFF7389 0.19 -0.3 6,633 + GFF7389 0.19 +0.7 6,634 - GFF7389 0.19 -0.2 6,634 - GFF7389 0.19 -0.4 6,634 - GFF7389 0.19 -0.1 6,655 + GFF7389 0.20 -0.1 6,656 - GFF7389 0.20 -0.1 6,656 - GFF7389 0.20 -0.6 6,656 - GFF7389 0.20 +0.4 6,789 + GFF7389 0.29 -0.3 6,994 + GFF7389 0.44 +0.9 6,995 - GFF7389 0.44 +0.3 7,133 - GFF7389 0.54 -0.9 7,489 + GFF7389 0.78 +0.1 7,489 + GFF7389 0.78 +0.9 7,525 + GFF7389 0.81 -0.1 7,525 + GFF7389 0.81 +1.0 7,525 + GFF7389 0.81 +3.3 7,550 - GFF7389 0.83 +0.4 7,550 - GFF7389 0.83 -1.1 7,628 - GFF7389 0.88 +0.0 7,690 + -0.2 7,690 + +0.9 7,726 + -0.2 7,898 - +0.2 7,898 - +0.6 8,150 + GFF7390 0.23 -0.6 8,150 + GFF7390 0.23 -0.2 8,151 - GFF7390 0.23 +1.3 8,151 - GFF7390 0.23 -0.6 8,241 + GFF7390 0.29 -0.4 8,242 - GFF7390 0.29 +2.7 8,242 - GFF7390 0.29 +0.2 8,503 + GFF7390 0.47 +0.1 8,503 + GFF7390 0.47 -0.6 8,504 - GFF7390 0.47 +0.4 8,657 + GFF7390 0.57 -0.2 8,763 + GFF7390 0.64 -0.8
Or see this region's nucleotide sequence