Strain Fitness in Variovorax sp. SCN45 around GFF7105

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
21,795	+		GFF7103	0.60	+1.0
21,796	-		GFF7103	0.60	+0.8
21,796	-		GFF7103	0.60	-1.4
21,796	-		GFF7103	0.60	-0.3
21,804	+		GFF7103	0.61	-0.1
21,804	+		GFF7103	0.61	+0.2
21,804	+		GFF7103	0.61	-0.5
21,804	+		GFF7103	0.61	-0.3
21,804	+		GFF7103	0.61	+0.1
21,804	+		GFF7103	0.61	+0.0
21,804	+		GFF7103	0.61	-0.4
21,804	+		GFF7103	0.61	-0.9
21,804	+		GFF7103	0.61	-1.6
21,804	+		GFF7103	0.61	+0.4
21,804	+		GFF7103	0.61	-0.3
21,804	+		GFF7103	0.61	-0.8
21,804	+		GFF7103	0.61	+0.9
21,804	+		GFF7103	0.61	+0.3
21,805	-		GFF7103	0.61	-0.4
21,805	-		GFF7103	0.61	-1.1
21,805	-		GFF7103	0.61	-0.9
21,805	-		GFF7103	0.61	-1.0
21,805	-		GFF7103	0.61	+0.4
21,805	-		GFF7103	0.61	+0.2
21,805	-		GFF7103	0.61	+0.4
21,805	-		GFF7103	0.61	-1.2
21,805	-		GFF7103	0.61	-0.2
21,805	-		GFF7103	0.61	+0.3
21,805	-		GFF7103	0.61	-1.2
21,805	-		GFF7103	0.61	+1.4
21,924	+		GFF7103	0.77	+0.3
21,924	+		GFF7103	0.77	+0.4
21,925	-		GFF7103	0.77	+1.2
21,925	-		GFF7103	0.77	+0.6
21,925	-		GFF7103	0.77	-1.7
21,925	-		GFF7103	0.77	-0.4
21,925	-		GFF7103	0.77	+0.3
21,925	-		GFF7103	0.77	+0.9
22,203	+		GFF7104	0.17	-0.8
22,334	-		GFF7104	0.37	-0.6
22,439	+		GFF7104	0.53	+0.6
22,440	-		GFF7104	0.53	-0.7
22,481	+		GFF7104	0.60	+0.3
22,481	+		GFF7104	0.60	+0.3
22,481	+		GFF7104	0.60	-0.3
22,481	+		GFF7104	0.60	-1.0
22,481	+		GFF7104	0.60	-1.4
22,481	+		GFF7104	0.60	-0.1
22,482	-		GFF7104	0.60	-0.6
22,482	-		GFF7104	0.60	+0.4
22,482	-		GFF7104	0.60	+0.4
22,482	-		GFF7104	0.60	+0.4
22,482	-		GFF7104	0.60	-0.6
22,482	-		GFF7104	0.60	-0.2
22,482	-		GFF7104	0.60	+1.3
22,607	+		GFF7104	0.79	+0.0
22,607	+		GFF7104	0.79	-2.6
22,607	+		GFF7104	0.79	-0.2
22,607	+		GFF7104	0.79	+0.2
22,607	+		GFF7104	0.79	-0.5
22,607	+		GFF7104	0.79	-0.3
22,608	-		GFF7104	0.79	-0.6
22,608	-		GFF7104	0.79	-0.8
22,608	-		GFF7104	0.79	+1.6
22,608	-		GFF7104	0.79	-0.3
22,637	+		GFF7104	0.84	-1.1
22,637	+		GFF7104	0.84	+1.1
22,637	+		GFF7104	0.84	-0.1
22,637	+		GFF7104	0.84	-0.6
22,638	-		GFF7104	0.84	+0.1
22,638	-		GFF7104	0.84	+0.8
22,703	+				+0.6
22,703	+				+1.1
22,703	+				-0.1
22,703	+				-0.1
22,703	+				-0.6
22,704	-				+0.3
22,704	-				-0.7
22,704	-				-1.0
22,704	-				+0.2
22,704	-				-1.0
22,704	-				+0.4
22,705	+				-0.6
22,705	+				+0.6
22,705	+				-0.7
22,705	+				-0.7
22,705	+				-0.2
22,705	+				+0.3
22,705	+				+0.8
22,705	+				-0.4
22,705	+				-0.1
22,705	+				-1.7
22,705	+				-1.1
22,705	+				-0.8
22,705	+				-0.3
22,705	+				-1.9
22,705	+				+0.9
22,705	+				-1.3
22,705	+				+0.0
22,705	+				-1.2
22,705	+				-1.0
22,705	+				-0.6
22,705	+				-0.2
22,705	+				-0.2
22,705	+				-0.3
22,705	+				-0.2
22,705	+				-1.9
22,705	+				-0.3
22,705	+				+0.3
22,706	-				-0.4
22,706	-				-1.1
22,706	-				+0.3
22,706	-				-1.6
22,706	-				+0.4
22,706	-				+0.0
22,706	-				-0.2
22,706	-				-0.1
22,706	-				-0.3
22,706	-				-0.6
22,706	-				+2.0
22,706	-				+0.1
22,706	-				-0.7
22,706	-				+0.6
22,706	-				-0.5
22,706	-				-0.9
22,706	-				-0.6
22,706	-				+0.0
22,706	-				-0.8
22,706	-				+0.2
22,707	-				+0.7
22,766	+				+0.1
22,780	+				+0.8
22,780	+				-0.2
22,780	+				+0.0
22,780	+				-0.7
22,780	+				+0.0
22,780	+				-1.1
22,780	+				-0.4
22,780	+				+0.0
22,780	+				-2.9
22,780	+				+0.3
22,780	+				+2.0
22,780	+				-0.2
22,781	-				-0.5
22,781	-				-0.4
22,781	-				-1.1
22,781	-				+1.0
22,781	-				-0.2
22,781	-				-1.0
22,781	-				-0.1
22,781	-				-0.1
22,781	-				-0.3
22,781	-				-1.0
22,781	-				-1.5
22,781	-				-1.0
22,828	+		GFF7105	0.20	+0.0
22,828	+		GFF7105	0.20	+1.1
23,171	+				-0.5
23,171	+				-0.2
23,174	+				-0.1
23,228	+				+0.2
23,229	-				+0.0
23,283	-				-0.6
23,283	-				-0.3
23,283	-				-0.0
23,317	+				+0.1
23,317	+				-0.0
23,317	+				-0.1
23,317	+				+0.2
23,317	+				+0.8
23,317	+				-0.4
23,318	-				-1.4
23,318	-				+0.4
23,318	-				-1.1
23,318	-				+1.4
23,318	-				-1.0
23,318	-				-0.1
23,318	-				-0.2
23,318	-				-0.4
23,400	+		GFF7106	0.15	+0.0
23,400	+		GFF7106	0.15	-0.4
23,400	+		GFF7106	0.15	-0.5
23,400	+		GFF7106	0.15	+0.8
23,400	+		GFF7106	0.15	-1.2
23,401	-		GFF7106	0.15	+0.0
23,401	-		GFF7106	0.15	+0.1
23,401	-		GFF7106	0.15	+0.2
23,422	+		GFF7106	0.17	+0.4
23,423	-		GFF7106	0.17	-0.2
23,770	+		GFF7106	0.53	-0.6
23,770	+		GFF7106	0.53	+0.6
23,770	+		GFF7106	0.53	-1.9
23,770	+		GFF7106	0.53	+0.5
23,771	-		GFF7106	0.53	-0.6
23,771	-		GFF7106	0.53	-0.1
23,771	-		GFF7106	0.53	+1.7
23,771	-		GFF7106	0.53	-0.7
23,771	-		GFF7106	0.53	-0.1
23,909	-		GFF7106	0.67	-0.6
23,923	+		GFF7106	0.68	-0.6