Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7025 and GFF7026 are separated by 81 nucleotides GFF7026 and GFF7027 are separated by 71 nucleotides GFF7027 and GFF7028 overlap by 23 nucleotides GFF7028 and GFF7029 are separated by 567 nucleotides
GFF7025 - hypothetical protein, at 42,319 to 42,666
GFF7025
GFF7026 - hypothetical protein, at 42,748 to 43,233
GFF7026
GFF7027 - no description, at 43,305 to 43,676
GFF7027
GFF7028 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 43,654 to 44,097
GFF7028
GFF7029 - hypothetical protein, at 44,665 to 46,230
GFF7029
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.702 kb on + strand at 42.703 kb on - strand at 42.703 kb on - strand at 43.265 kb on + strand at 43.266 kb on - strand at 43.275 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.278 kb on + strand at 43.279 kb on - strand at 43.279 kb on - strand at 43.279 kb on - strand at 43.413 kb on + strand, within GFF7027 at 43.413 kb on + strand, within GFF7027 at 43.413 kb on + strand, within GFF7027 at 43.414 kb on - strand, within GFF7027 at 43.414 kb on - strand, within GFF7027 at 43.656 kb on - strand at 43.656 kb on - strand at 43.656 kb on - strand at 43.656 kb on - strand at 43.736 kb on + strand, within GFF7028 at 43.736 kb on + strand, within GFF7028 at 43.736 kb on + strand, within GFF7028 at 43.737 kb on - strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.811 kb on + strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 43.812 kb on - strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.039 kb on + strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.040 kb on - strand, within GFF7028 at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.093 kb on + strand at 44.094 kb on - strand at 44.094 kb on - strand at 44.094 kb on - strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.110 kb on + strand at 44.111 kb on + strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.111 kb on - strand at 44.350 kb on + strand at 44.350 kb on + strand at 44.351 kb on - strand at 44.351 kb on - strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.358 kb on + strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.359 kb on - strand at 44.422 kb on + strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.423 kb on - strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.455 kb on + strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.456 kb on - strand at 44.463 kb on - strand at 44.463 kb on - strand at 44.475 kb on + strand at 44.475 kb on + strand at 44.475 kb on + strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.476 kb on - strand at 44.545 kb on + strand at 44.545 kb on + strand at 44.545 kb on + strand at 44.546 kb on - strand at 44.546 kb on - strand at 44.546 kb on - strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.549 kb on + strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.576 kb on + strand at 44.577 kb on - strand at 44.586 kb on + strand at 44.587 kb on - strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.614 kb on + strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.615 kb on - strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.642 kb on + strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.643 kb on - strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.742 kb on + strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.743 kb on - strand at 44.745 kb on - strand at 44.745 kb on - strand at 44.745 kb on - strand at 44.745 kb on - strand at 44.800 kb on + strand at 44.800 kb on + strand at 44.801 kb on - strand at 44.801 kb on - strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.806 kb on + strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.807 kb on - strand at 44.821 kb on - strand at 44.821 kb on - strand at 44.831 kb on + strand, within GFF7029 at 44.831 kb on + strand, within GFF7029 at 44.831 kb on + strand, within GFF7029 at 44.832 kb on - strand, within GFF7029 at 44.832 kb on - strand, within GFF7029 at 44.832 kb on - strand, within GFF7029 at 44.832 kb on - strand, within GFF7029 at 44.832 kb on - strand, within GFF7029 at 44.847 kb on + strand, within GFF7029 at 44.847 kb on + strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 44.848 kb on - strand, within GFF7029 at 45.045 kb on - strand, within GFF7029 at 45.071 kb on + strand, within GFF7029 at 45.071 kb on + strand, within GFF7029 at 45.071 kb on + strand, within GFF7029 at 45.071 kb on + strand, within GFF7029 at 45.071 kb on + strand, within GFF7029 at 45.072 kb on - strand, within GFF7029 at 45.072 kb on - strand, within GFF7029 at 45.072 kb on - strand, within GFF7029 at 45.072 kb on - strand, within GFF7029 at 45.072 kb on - strand, within GFF7029 at 45.072 kb on - strand, within GFF7029
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 42,702 + -1.0 42,703 - +1.3 42,703 - +0.2 43,265 + -0.3 43,266 - -1.5 43,275 + +0.2 43,278 + +0.5 43,278 + -0.5 43,278 + +0.2 43,278 + -0.8 43,278 + -0.3 43,279 - -0.2 43,279 - +1.2 43,279 - +0.5 43,413 + GFF7027 0.29 -1.9 43,413 + GFF7027 0.29 -0.1 43,413 + GFF7027 0.29 +0.0 43,414 - GFF7027 0.29 +0.2 43,414 - GFF7027 0.29 -0.1 43,656 - +0.5 43,656 - -0.1 43,656 - -0.9 43,656 - -0.4 43,736 + GFF7028 0.18 +0.2 43,736 + GFF7028 0.18 -0.2 43,736 + GFF7028 0.18 -0.0 43,737 - GFF7028 0.19 -1.7 43,811 + GFF7028 0.35 -0.8 43,811 + GFF7028 0.35 +0.8 43,811 + GFF7028 0.35 +0.8 43,811 + GFF7028 0.35 -1.6 43,811 + GFF7028 0.35 -0.0 43,811 + GFF7028 0.35 -0.5 43,812 - GFF7028 0.36 -0.1 43,812 - GFF7028 0.36 +0.7 43,812 - GFF7028 0.36 -0.4 43,812 - GFF7028 0.36 -1.0 43,812 - GFF7028 0.36 -0.6 44,039 + GFF7028 0.87 +0.8 44,039 + GFF7028 0.87 -0.5 44,039 + GFF7028 0.87 -1.5 44,040 - GFF7028 0.87 -0.2 44,040 - GFF7028 0.87 +0.4 44,040 - GFF7028 0.87 -0.8 44,040 - GFF7028 0.87 -0.3 44,040 - GFF7028 0.87 -2.2 44,093 + -1.5 44,093 + -0.1 44,093 + -0.3 44,093 + +0.8 44,093 + +0.4 44,093 + -1.0 44,093 + -1.8 44,094 - -0.3 44,094 - -1.0 44,094 - -0.7 44,110 + +1.2 44,110 + +0.2 44,110 + +1.8 44,110 + -1.0 44,110 + +0.0 44,110 + -0.1 44,110 + -0.2 44,110 + -1.5 44,110 + +0.0 44,110 + -1.2 44,110 + -1.9 44,110 + -0.7 44,111 + -0.3 44,111 - -1.0 44,111 - -2.6 44,111 - -1.8 44,111 - +0.0 44,111 - +0.8 44,111 - -0.0 44,111 - -0.5 44,111 - +0.0 44,111 - +0.1 44,111 - +0.0 44,111 - -2.1 44,350 + +0.1 44,350 + +0.9 44,351 - +1.8 44,351 - -0.2 44,358 + -1.0 44,358 + +0.1 44,358 + +0.7 44,358 + -1.3 44,358 + -0.3 44,358 + +0.5 44,358 + -2.6 44,358 + -0.2 44,359 - -0.0 44,359 - -0.9 44,359 - +1.1 44,359 - +1.0 44,359 - +0.2 44,422 + +0.4 44,423 - -0.8 44,423 - +0.2 44,423 - -0.7 44,423 - +0.0 44,423 - -0.1 44,423 - +0.0 44,455 + -1.5 44,455 + -0.1 44,455 + +0.1 44,455 + -0.5 44,455 + -0.3 44,455 + -1.8 44,455 + -1.2 44,455 + -0.4 44,456 - +0.0 44,456 - +1.1 44,456 - -1.0 44,456 - +0.1 44,456 - +0.8 44,456 - +0.2 44,456 - -1.5 44,456 - -0.6 44,456 - +0.2 44,456 - -0.2 44,456 - -0.1 44,456 - -0.5 44,456 - -2.5 44,456 - -0.3 44,463 - -0.2 44,463 - -0.1 44,475 + -0.1 44,475 + -0.6 44,475 + -0.2 44,476 - -0.4 44,476 - +0.3 44,476 - +0.1 44,476 - +1.2 44,476 - -1.3 44,476 - -0.3 44,476 - -0.2 44,545 + -0.7 44,545 + +0.5 44,545 + -0.9 44,546 - -2.1 44,546 - -0.2 44,546 - -0.2 44,549 + -0.9 44,549 + +0.5 44,549 + +0.5 44,549 + -1.3 44,549 + -1.6 44,549 + -1.2 44,549 + -0.1 44,549 + +1.8 44,549 + -0.5 44,549 + -0.7 44,549 + -1.0 44,549 + -1.1 44,549 + -0.7 44,550 - -1.3 44,550 - -0.6 44,550 - +0.0 44,550 - +0.2 44,550 - -0.3 44,550 - -0.6 44,550 - -0.8 44,550 - +1.5 44,550 - +0.1 44,550 - -0.8 44,550 - -0.1 44,550 - +0.4 44,550 - +1.4 44,550 - -0.2 44,550 - -1.1 44,550 - -0.4 44,550 - -0.4 44,550 - -0.7 44,550 - -1.2 44,550 - -0.0 44,550 - +0.5 44,550 - +0.5 44,550 - -0.6 44,576 + -0.6 44,577 - -0.3 44,586 + +0.0 44,587 - -0.4 44,614 + -0.9 44,614 + -0.5 44,614 + +0.1 44,614 + -0.8 44,615 - -0.3 44,615 - -0.6 44,615 - +0.8 44,615 - -0.3 44,615 - +0.7 44,642 + -1.0 44,642 + -0.6 44,642 + +0.1 44,642 + -2.5 44,643 - +0.2 44,643 - +0.1 44,643 - -0.5 44,643 - -0.4 44,643 - +0.3 44,643 - -0.8 44,643 - +0.7 44,643 - -0.5 44,742 + +0.4 44,742 + -0.8 44,742 + -0.2 44,742 + +0.3 44,742 + +0.9 44,742 + +0.0 44,742 + +1.0 44,743 - +0.3 44,743 - -0.8 44,743 - -0.4 44,743 - +1.1 44,743 - +0.1 44,743 - -0.3 44,743 - -0.0 44,743 - -1.0 44,745 - -1.4 44,745 - -1.2 44,745 - +0.7 44,745 - -1.5 44,800 + +0.2 44,800 + -0.2 44,801 - -2.1 44,801 - -0.5 44,806 + +0.2 44,806 + -0.7 44,806 + +0.2 44,806 + +0.1 44,806 + -0.9 44,806 + -0.1 44,806 + +0.3 44,806 + -0.1 44,807 - -2.0 44,807 - -0.3 44,807 - +1.2 44,807 - -0.3 44,807 - +0.0 44,807 - -0.0 44,807 - +0.4 44,807 - -0.3 44,821 - +0.2 44,821 - +0.1 44,831 + GFF7029 0.11 -0.2 44,831 + GFF7029 0.11 +1.5 44,831 + GFF7029 0.11 -0.7 44,832 - GFF7029 0.11 -0.7 44,832 - GFF7029 0.11 -0.5 44,832 - GFF7029 0.11 +0.1 44,832 - GFF7029 0.11 +0.8 44,832 - GFF7029 0.11 -1.3 44,847 + GFF7029 0.12 +0.1 44,847 + GFF7029 0.12 -0.1 44,848 - GFF7029 0.12 -1.5 44,848 - GFF7029 0.12 -0.1 44,848 - GFF7029 0.12 -0.3 44,848 - GFF7029 0.12 -0.1 44,848 - GFF7029 0.12 +0.2 44,848 - GFF7029 0.12 -0.9 45,045 - GFF7029 0.24 +0.5 45,071 + GFF7029 0.26 -1.1 45,071 + GFF7029 0.26 -0.2 45,071 + GFF7029 0.26 -0.7 45,071 + GFF7029 0.26 -0.4 45,071 + GFF7029 0.26 -2.8 45,072 - GFF7029 0.26 +0.7 45,072 - GFF7029 0.26 -0.6 45,072 - GFF7029 0.26 -1.0 45,072 - GFF7029 0.26 -1.3 45,072 - GFF7029 0.26 -0.2 45,072 - GFF7029 0.26 -0.5
Or see this region's nucleotide sequence