Strain Fitness in Variovorax sp. SCN45 around GFF689

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF687 and GFF688 overlap by 4 nucleotidesGFF688 and GFF689 overlap by 4 nucleotidesGFF689 and GFF690 are separated by 56 nucleotidesGFF690 and GFF691 are separated by 82 nucleotides GFF687 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 741,288 to 742,988 GFF687 GFF688 - Uncharacterized conserved protein, at 742,985 to 743,437 GFF688 GFF689 - protein of unknown function DUF521, at 743,434 to 744,729 GFF689 GFF690 - Transcriptional regulator, IclR family, at 744,786 to 745,628 GFF690 GFF691 - hypothetical protein, at 745,711 to 747,162 GFF691 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.528 kb on + strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.529 kb on - strand, within GFF687at 742.547 kb on - strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.711 kb on + strand, within GFF687at 742.712 kb on - strand, within GFF687at 742.712 kb on - strand, within GFF687at 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.948 kb on + strandat 742.949 kb on - strandat 742.949 kb on - strandat 743.441 kb on + strandat 743.442 kb on - strandat 743.442 kb on - strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.771 kb on + strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.772 kb on - strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.795 kb on + strand, within GFF689at 743.796 kb on - strand, within GFF689at 743.796 kb on - strand, within GFF689at 743.837 kb on + strand, within GFF689at 743.838 kb on - strand, within GFF689at 743.865 kb on - strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.945 kb on + strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 743.946 kb on - strand, within GFF689at 744.078 kb on - strand, within GFF689at 744.174 kb on - strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.257 kb on + strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.258 kb on - strand, within GFF689at 744.323 kb on + strand, within GFF689at 744.323 kb on + strand, within GFF689at 744.324 kb on - strand, within GFF689at 744.386 kb on + strand, within GFF689at 744.386 kb on + strand, within GFF689at 744.386 kb on + strand, within GFF689at 744.386 kb on + strand, within GFF689at 744.644 kb on + strandat 744.645 kb on - strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.787 kb on + strandat 744.788 kb on - strandat 744.788 kb on - strandat 744.807 kb on + strandat 744.807 kb on + strandat 744.808 kb on - strandat 745.003 kb on + strand, within GFF690at 745.132 kb on + strand, within GFF690at 745.132 kb on + strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.133 kb on - strand, within GFF690at 745.237 kb on + strand, within GFF690at 745.262 kb on - strand, within GFF690at 745.262 kb on - strand, within GFF690at 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.667 kb on + strandat 745.668 kb on - strandat 745.668 kb on - strandat 745.668 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
742,528 + GFF687 0.73 -0.4
742,528 + GFF687 0.73 +0.3
742,528 + GFF687 0.73 -0.5
742,528 + GFF687 0.73 +0.4
742,529 - GFF687 0.73 -0.1
742,529 - GFF687 0.73 +0.9
742,529 - GFF687 0.73 +0.7
742,529 - GFF687 0.73 +0.0
742,529 - GFF687 0.73 -0.6
742,547 - GFF687 0.74 -1.4
742,711 + GFF687 0.84 -0.0
742,711 + GFF687 0.84 +0.6
742,711 + GFF687 0.84 +1.7
742,711 + GFF687 0.84 +0.4
742,711 + GFF687 0.84 -0.3
742,711 + GFF687 0.84 -2.3
742,712 - GFF687 0.84 -0.2
742,712 - GFF687 0.84 -1.4
742,948 + +0.5
742,948 + +0.2
742,948 + +0.4
742,948 + -0.1
742,948 + -0.2
742,949 - -0.1
742,949 - -0.0
743,441 + -0.7
743,442 - -1.7
743,442 - +1.6
743,531 + +0.2
743,531 + -0.9
743,531 + +0.4
743,771 + GFF689 0.26 -1.5
743,772 - GFF689 0.26 -0.6
743,772 - GFF689 0.26 -0.5
743,772 - GFF689 0.26 -0.3
743,772 - GFF689 0.26 -0.1
743,772 - GFF689 0.26 -0.6
743,772 - GFF689 0.26 -0.6
743,772 - GFF689 0.26 +0.7
743,795 + GFF689 0.28 -1.7
743,795 + GFF689 0.28 +0.0
743,795 + GFF689 0.28 -3.1
743,795 + GFF689 0.28 -0.4
743,795 + GFF689 0.28 -0.7
743,796 - GFF689 0.28 +0.4
743,796 - GFF689 0.28 +0.9
743,837 + GFF689 0.31 -0.6
743,838 - GFF689 0.31 -1.0
743,865 - GFF689 0.33 +0.3
743,945 + GFF689 0.39 -1.3
743,945 + GFF689 0.39 -0.7
743,945 + GFF689 0.39 -1.1
743,945 + GFF689 0.39 -1.1
743,945 + GFF689 0.39 -1.9
743,945 + GFF689 0.39 -0.6
743,945 + GFF689 0.39 +0.7
743,945 + GFF689 0.39 +0.1
743,945 + GFF689 0.39 -0.7
743,945 + GFF689 0.39 -2.1
743,945 + GFF689 0.39 +0.4
743,945 + GFF689 0.39 -0.3
743,946 - GFF689 0.40 -1.7
743,946 - GFF689 0.40 -0.1
743,946 - GFF689 0.40 +1.0
743,946 - GFF689 0.40 -1.4
743,946 - GFF689 0.40 +0.4
743,946 - GFF689 0.40 -0.0
744,078 - GFF689 0.50 -0.9
744,174 - GFF689 0.57 +0.1
744,257 + GFF689 0.64 +0.6
744,257 + GFF689 0.64 +1.9
744,257 + GFF689 0.64 -1.6
744,257 + GFF689 0.64 -0.4
744,257 + GFF689 0.64 +1.0
744,257 + GFF689 0.64 +0.3
744,257 + GFF689 0.64 -0.1
744,258 - GFF689 0.64 +0.1
744,258 - GFF689 0.64 -0.6
744,258 - GFF689 0.64 -0.7
744,258 - GFF689 0.64 -0.9
744,258 - GFF689 0.64 +0.4
744,258 - GFF689 0.64 -1.1
744,258 - GFF689 0.64 +0.1
744,323 + GFF689 0.69 -0.1
744,323 + GFF689 0.69 +0.4
744,324 - GFF689 0.69 -1.1
744,386 + GFF689 0.73 +0.2
744,386 + GFF689 0.73 -0.4
744,386 + GFF689 0.73 +1.0
744,386 + GFF689 0.73 +0.2
744,644 + -0.3
744,645 - -1.6
744,698 + -0.7
744,698 + -0.4
744,698 + -0.4
744,698 + -0.6
744,699 - +0.8
744,699 - +0.5
744,699 - +1.0
744,699 - -0.7
744,699 - +1.4
744,699 - +0.1
744,699 - -1.1
744,787 + -1.0
744,788 - +0.2
744,788 - -0.5
744,807 + -0.2
744,807 + -0.4
744,808 - -1.0
745,003 + GFF690 0.26 +0.4
745,132 + GFF690 0.41 +0.0
745,132 + GFF690 0.41 -0.8
745,133 - GFF690 0.41 -1.6
745,133 - GFF690 0.41 +0.4
745,133 - GFF690 0.41 -0.4
745,133 - GFF690 0.41 -1.6
745,237 + GFF690 0.53 +0.3
745,262 - GFF690 0.56 -0.8
745,262 - GFF690 0.56 -0.4
745,667 + -0.9
745,667 + +0.1
745,667 + -0.2
745,667 + -1.6
745,667 + +0.2
745,668 - +0.0
745,668 - +1.0
745,668 - -0.1

Or see this region's nucleotide sequence