Strain Fitness in Variovorax sp. SCN45 around GFF6851

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6850 and GFF6851 are separated by 30 nucleotidesGFF6851 and GFF6852 are separated by 75 nucleotides GFF6850 - Hemolysin activation/secretion protein associated with VreARI signalling system, at 32,915 to 34,564 GFF6850 GFF6851 - no description, at 34,595 to 34,741 GFF6851 GFF6852 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 34,817 to 48,493 GFF6852 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.916 kb on - strand, within GFF6850at 33.916 kb on - strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.138 kb on - strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.234 kb on - strand, within GFF6850at 34.234 kb on - strand, within GFF6850at 34.261 kb on - strand, within GFF6850at 34.383 kb on + strand, within GFF6850at 34.384 kb on - strand, within GFF6850at 34.384 kb on - strand, within GFF6850at 34.566 kb on + strandat 34.566 kb on + strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.638 kb on + strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.644 kb on + strand, within GFF6851at 34.644 kb on + strand, within GFF6851at 34.645 kb on - strand, within GFF6851at 34.648 kb on + strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.663 kb on - strand, within GFF6851at 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.917 kb on + strandat 35.379 kb on + strandat 35.400 kb on + strandat 35.400 kb on + strandat 35.401 kb on - strandat 35.676 kb on + strandat 35.677 kb on - strandat 35.691 kb on + strandat 35.691 kb on + strandat 35.691 kb on + strandat 35.692 kb on - strandat 35.692 kb on - strandat 35.692 kb on - strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.733 kb on + strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strandat 35.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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33,648 + GFF6850 0.44 -0.8
33,648 + GFF6850 0.44 +0.1
33,648 + GFF6850 0.44 -0.5
33,648 + GFF6850 0.44 -0.7
33,649 - GFF6850 0.44 -0.4
33,649 - GFF6850 0.44 -1.1
33,649 - GFF6850 0.44 +0.1
33,649 - GFF6850 0.44 -0.1
33,729 + GFF6850 0.49 -0.2
33,729 + GFF6850 0.49 -0.0
33,730 - GFF6850 0.49 +0.1
33,730 - GFF6850 0.49 -1.1
33,730 - GFF6850 0.49 -0.3
33,730 - GFF6850 0.49 -0.8
33,730 - GFF6850 0.49 -0.8
33,777 + GFF6850 0.52 -1.2
33,777 + GFF6850 0.52 +0.7
33,777 + GFF6850 0.52 +1.0
33,915 + GFF6850 0.61 -0.7
33,915 + GFF6850 0.61 -0.1
33,915 + GFF6850 0.61 -0.1
33,916 - GFF6850 0.61 +0.3
33,916 - GFF6850 0.61 -0.4
34,137 + GFF6850 0.74 -0.5
34,137 + GFF6850 0.74 +0.4
34,137 + GFF6850 0.74 -1.0
34,137 + GFF6850 0.74 -0.5
34,138 - GFF6850 0.74 +0.3
34,233 + GFF6850 0.80 -1.0
34,233 + GFF6850 0.80 -1.5
34,233 + GFF6850 0.80 -0.3
34,234 - GFF6850 0.80 -0.2
34,234 - GFF6850 0.80 -0.6
34,261 - GFF6850 0.82 -1.0
34,383 + GFF6850 0.89 -0.1
34,384 - GFF6850 0.89 -0.7
34,384 - GFF6850 0.89 -0.3
34,566 + -0.3
34,566 + +0.1
34,567 - -0.1
34,567 - -1.2
34,567 - +0.0
34,567 - -0.7
34,567 - -1.1
34,567 - -0.2
34,638 + GFF6851 0.29 -0.1
34,639 - GFF6851 0.30 -0.2
34,639 - GFF6851 0.30 -1.7
34,639 - GFF6851 0.30 -1.3
34,644 + GFF6851 0.33 -0.4
34,644 + GFF6851 0.33 +1.1
34,645 - GFF6851 0.34 +0.3
34,648 + GFF6851 0.36 -0.8
34,649 - GFF6851 0.37 -0.7
34,649 - GFF6851 0.37 -0.7
34,649 - GFF6851 0.37 +0.1
34,663 - GFF6851 0.46 -1.3
34,739 + +0.1
34,739 + -0.8
34,739 + -2.1
34,739 + +0.4
34,739 + +0.1
34,917 + -1.1
35,379 + -0.2
35,400 + +0.7
35,400 + -0.4
35,401 - +0.9
35,676 + -0.1
35,677 - -1.8
35,691 + -0.1
35,691 + -0.4
35,691 + -1.3
35,692 - -0.4
35,692 - -0.4
35,692 - -0.5
35,733 + -0.0
35,733 + +0.8
35,733 + -0.1
35,733 + -0.2
35,733 + +0.9
35,733 + +0.0
35,733 + +0.1
35,733 + -0.5
35,733 + -0.1
35,733 + -1.1
35,733 + +0.3
35,734 - -0.4
35,734 - -0.0
35,734 - -0.1
35,734 - -1.8
35,734 - -0.1
35,734 - -0.6
35,734 - -0.4
35,734 - +0.3
35,734 - -0.3

Or see this region's nucleotide sequence