Strain Fitness in Variovorax sp. SCN45 around GFF6801

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6799 and GFF6800 are separated by 15 nucleotidesGFF6800 and GFF6801 overlap by 4 nucleotidesGFF6801 and GFF6802 are separated by 97 nucleotides GFF6799 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 46,395 to 47,057 GFF6799 GFF6800 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 47,073 to 47,876 GFF6800 GFF6801 - Transcriptional regulator, GntR family, at 47,873 to 48,664 GFF6801 GFF6802 - Uncharacterized MFS-type transporter, at 48,762 to 50,102 GFF6802 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.879 kb on + strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 46.880 kb on - strand, within GFF6799at 47.047 kb on + strandat 47.365 kb on + strand, within GFF6800at 47.365 kb on + strand, within GFF6800at 47.365 kb on + strand, within GFF6800at 47.485 kb on + strand, within GFF6800at 47.485 kb on + strand, within GFF6800at 47.486 kb on - strand, within GFF6800at 47.596 kb on + strand, within GFF6800at 47.876 kb on + strandat 47.876 kb on + strandat 47.876 kb on + strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.877 kb on - strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.888 kb on + strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.889 kb on - strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.892 kb on + strandat 47.893 kb on - strandat 47.893 kb on - strandat 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.134 kb on + strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.135 kb on - strand, within GFF6801at 48.177 kb on + strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.178 kb on - strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.210 kb on + strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.211 kb on - strand, within GFF6801at 48.394 kb on + strand, within GFF6801at 48.563 kb on + strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.564 kb on - strand, within GFF6801at 48.664 kb on + strandat 48.664 kb on + strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.665 kb on - strandat 48.674 kb on + strandat 48.674 kb on + strandat 48.675 kb on - strandat 48.675 kb on - strandat 48.699 kb on + strandat 48.699 kb on + strandat 48.843 kb on + strandat 48.843 kb on + strandat 48.844 kb on - strandat 48.847 kb on + strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 48.848 kb on - strandat 49.210 kb on + strand, within GFF6802at 49.210 kb on + strand, within GFF6802at 49.280 kb on - strand, within GFF6802at 49.280 kb on - strand, within GFF6802at 49.280 kb on - strand, within GFF6802

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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46,879 + GFF6799 0.73 -1.4
46,879 + GFF6799 0.73 -0.5
46,879 + GFF6799 0.73 +1.6
46,879 + GFF6799 0.73 +0.5
46,879 + GFF6799 0.73 -0.2
46,879 + GFF6799 0.73 -0.4
46,880 - GFF6799 0.73 -0.5
46,880 - GFF6799 0.73 +1.3
46,880 - GFF6799 0.73 +0.6
46,880 - GFF6799 0.73 +0.1
46,880 - GFF6799 0.73 -0.3
46,880 - GFF6799 0.73 +0.5
47,047 + -0.9
47,365 + GFF6800 0.36 -0.9
47,365 + GFF6800 0.36 -0.5
47,365 + GFF6800 0.36 +0.1
47,485 + GFF6800 0.51 -0.2
47,485 + GFF6800 0.51 +0.4
47,486 - GFF6800 0.51 -0.5
47,596 + GFF6800 0.65 -0.3
47,876 + -0.2
47,876 + -1.4
47,876 + -0.3
47,877 - +0.2
47,877 - -0.7
47,877 - +0.1
47,877 - -1.1
47,877 - +0.5
47,877 - -1.2
47,877 - -0.4
47,877 - -1.7
47,877 - -0.6
47,877 - -0.5
47,877 - -0.2
47,877 - -0.2
47,888 + -0.7
47,888 + +0.0
47,888 + +0.2
47,888 + -0.9
47,889 - +0.2
47,889 - +0.8
47,889 - -0.1
47,889 - -0.8
47,889 - -0.4
47,889 - -0.8
47,892 + -0.2
47,892 + +1.1
47,892 + +0.2
47,892 + -1.4
47,893 - -1.4
47,893 - +0.5
48,134 + GFF6801 0.33 -1.8
48,134 + GFF6801 0.33 -1.1
48,134 + GFF6801 0.33 -0.8
48,134 + GFF6801 0.33 -0.3
48,134 + GFF6801 0.33 -0.5
48,134 + GFF6801 0.33 +1.1
48,134 + GFF6801 0.33 -0.6
48,134 + GFF6801 0.33 +1.3
48,134 + GFF6801 0.33 -1.2
48,134 + GFF6801 0.33 -0.4
48,134 + GFF6801 0.33 -0.5
48,135 - GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 -0.0
48,135 - GFF6801 0.33 -0.0
48,135 - GFF6801 0.33 +0.6
48,135 - GFF6801 0.33 +0.6
48,135 - GFF6801 0.33 -1.6
48,135 - GFF6801 0.33 +0.1
48,135 - GFF6801 0.33 -1.2
48,135 - GFF6801 0.33 +0.3
48,135 - GFF6801 0.33 +1.6
48,135 - GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 -0.4
48,135 - GFF6801 0.33 +0.1
48,177 + GFF6801 0.38 -0.7
48,178 - GFF6801 0.39 -1.1
48,178 - GFF6801 0.39 -1.3
48,178 - GFF6801 0.39 -0.7
48,210 + GFF6801 0.43 -0.5
48,210 + GFF6801 0.43 +0.3
48,211 - GFF6801 0.43 -1.8
48,211 - GFF6801 0.43 -0.8
48,211 - GFF6801 0.43 -0.3
48,394 + GFF6801 0.66 -0.2
48,563 + GFF6801 0.87 -0.9
48,564 - GFF6801 0.87 -0.6
48,564 - GFF6801 0.87 -0.9
48,664 + +0.1
48,664 + -0.9
48,665 - +1.3
48,665 - +1.1
48,665 - +0.8
48,674 + -0.7
48,674 + +2.1
48,675 - -1.2
48,675 - +1.9
48,699 + -0.3
48,699 + +0.1
48,843 + -0.1
48,843 + -0.7
48,844 - -0.2
48,847 + +1.3
48,848 - +0.9
48,848 - -1.4
48,848 - -0.2
48,848 - +0.6
48,848 - +0.4
48,848 - -0.8
49,210 + GFF6802 0.33 +0.2
49,210 + GFF6802 0.33 +0.8
49,280 - GFF6802 0.39 -0.2
49,280 - GFF6802 0.39 -1.7
49,280 - GFF6802 0.39 -0.1

Or see this region's nucleotide sequence