Strain Fitness in Variovorax sp. SCN45 around GFF6565

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6564 and GFF6565 are separated by 300 nucleotidesGFF6565 and GFF6566 are separated by 188 nucleotides GFF6564 - hypothetical protein, at 942 to 3,197 GFF6564 GFF6565 - hypothetical protein, at 3,498 to 4,742 GFF6565 GFF6566 - hypothetical protein, at 4,931 to 7,594 GFF6566 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.580 kb on + strand, within GFF6564at 2.581 kb on - strand, within GFF6564at 2.581 kb on - strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.745 kb on + strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.746 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.748 kb on - strand, within GFF6564at 2.845 kb on - strand, within GFF6564at 2.848 kb on + strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.849 kb on - strand, within GFF6564at 2.982 kb on + strandat 2.982 kb on + strandat 2.983 kb on - strandat 2.983 kb on - strandat 3.025 kb on - strandat 3.063 kb on + strandat 3.063 kb on + strandat 3.064 kb on - strandat 3.064 kb on - strandat 3.067 kb on + strandat 3.068 kb on - strandat 3.102 kb on + strandat 3.102 kb on + strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.103 kb on - strandat 3.349 kb on + strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.350 kb on - strandat 3.377 kb on - strandat 3.426 kb on + strandat 3.529 kb on + strandat 3.529 kb on + strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.530 kb on - strandat 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.651 kb on + strand, within GFF6565at 3.652 kb on - strand, within GFF6565at 3.652 kb on - strand, within GFF6565at 3.705 kb on + strand, within GFF6565at 3.714 kb on + strand, within GFF6565at 3.714 kb on + strand, within GFF6565at 3.846 kb on - strand, within GFF6565at 4.150 kb on - strand, within GFF6565at 4.150 kb on - strand, within GFF6565at 4.166 kb on - strand, within GFF6565at 4.245 kb on + strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.426 kb on + strand, within GFF6565at 4.427 kb on - strand, within GFF6565at 4.669 kb on - strandat 4.799 kb on + strandat 4.820 kb on + strandat 4.870 kb on - strandat 4.923 kb on + strandat 4.924 kb on - strandat 4.981 kb on - strandat 5.033 kb on + strandat 5.034 kb on - strandat 5.034 kb on - strandat 5.196 kb on + strandat 5.197 kb on - strandat 5.197 kb on - strandat 5.241 kb on + strand, within GFF6566at 5.244 kb on + strand, within GFF6566at 5.267 kb on + strand, within GFF6566at 5.267 kb on + strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.287 kb on - strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.359 kb on - strand, within GFF6566at 5.359 kb on - strand, within GFF6566at 5.395 kb on + strand, within GFF6566at 5.539 kb on - strand, within GFF6566at 5.539 kb on - strand, within GFF6566at 5.574 kb on + strand, within GFF6566at 5.574 kb on + strand, within GFF6566at 5.575 kb on - strand, within GFF6566at 5.601 kb on + strand, within GFF6566

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
2,580 + GFF6564 0.73 +0.9
2,581 - GFF6564 0.73 +0.5
2,581 - GFF6564 0.73 -0.2
2,745 + GFF6564 0.80 -0.4
2,745 + GFF6564 0.80 -2.3
2,745 + GFF6564 0.80 -1.1
2,745 + GFF6564 0.80 -0.0
2,745 + GFF6564 0.80 -0.2
2,745 + GFF6564 0.80 +0.4
2,745 + GFF6564 0.80 +0.6
2,745 + GFF6564 0.80 -0.8
2,745 + GFF6564 0.80 -1.1
2,746 - GFF6564 0.80 -1.1
2,746 - GFF6564 0.80 -0.9
2,746 - GFF6564 0.80 +0.3
2,746 - GFF6564 0.80 -1.0
2,746 - GFF6564 0.80 +0.2
2,746 - GFF6564 0.80 -0.2
2,746 - GFF6564 0.80 -0.6
2,748 - GFF6564 0.80 +0.4
2,748 - GFF6564 0.80 -0.1
2,748 - GFF6564 0.80 -0.7
2,845 - GFF6564 0.84 -0.6
2,848 + GFF6564 0.84 -0.2
2,849 - GFF6564 0.85 -0.6
2,849 - GFF6564 0.85 -0.4
2,849 - GFF6564 0.85 -0.4
2,849 - GFF6564 0.85 +0.2
2,849 - GFF6564 0.85 +0.6
2,982 + -0.2
2,982 + -0.4
2,983 - +0.2
2,983 - -1.0
3,025 - -0.2
3,063 + -1.2
3,063 + +0.8
3,064 - -0.9
3,064 - -0.0
3,067 + -0.9
3,068 - +0.3
3,102 + +0.3
3,102 + -0.6
3,103 - -0.3
3,103 - -0.7
3,103 - +0.9
3,103 - -0.7
3,103 - +0.2
3,103 - +0.0
3,349 + -0.3
3,350 - -1.1
3,350 - +0.6
3,350 - +0.1
3,350 - +0.8
3,350 - -0.1
3,350 - -0.1
3,377 - -0.3
3,426 + +0.8
3,529 + -0.2
3,529 + -1.0
3,530 - +0.9
3,530 - -0.8
3,530 - -0.9
3,530 - -0.8
3,651 + GFF6565 0.12 +0.3
3,651 + GFF6565 0.12 -0.4
3,651 + GFF6565 0.12 +0.0
3,651 + GFF6565 0.12 -0.4
3,651 + GFF6565 0.12 +0.7
3,651 + GFF6565 0.12 -0.4
3,651 + GFF6565 0.12 -0.8
3,652 - GFF6565 0.12 +2.5
3,652 - GFF6565 0.12 +0.2
3,705 + GFF6565 0.17 -0.2
3,714 + GFF6565 0.17 -0.9
3,714 + GFF6565 0.17 -1.0
3,846 - GFF6565 0.28 +0.3
4,150 - GFF6565 0.52 +0.6
4,150 - GFF6565 0.52 +0.0
4,166 - GFF6565 0.54 +1.1
4,245 + GFF6565 0.60 +0.3
4,246 - GFF6565 0.60 -0.4
4,246 - GFF6565 0.60 +1.6
4,246 - GFF6565 0.60 -0.5
4,246 - GFF6565 0.60 -0.8
4,260 - GFF6565 0.61 -0.2
4,260 - GFF6565 0.61 -0.2
4,260 - GFF6565 0.61 +0.6
4,426 + GFF6565 0.75 -0.5
4,427 - GFF6565 0.75 +0.1
4,669 - -1.1
4,799 + -2.2
4,820 + +0.5
4,870 - -0.5
4,923 + -0.6
4,924 - +0.5
4,981 - +0.6
5,033 + +0.0
5,034 - -0.3
5,034 - +0.7
5,196 + -2.5
5,197 - -0.4
5,197 - -1.0
5,241 + GFF6566 0.12 -0.7
5,244 + GFF6566 0.12 +0.7
5,267 + GFF6566 0.13 -1.4
5,267 + GFF6566 0.13 -0.3
5,268 - GFF6566 0.13 -0.9
5,268 - GFF6566 0.13 -0.1
5,268 - GFF6566 0.13 -0.5
5,287 - GFF6566 0.13 -0.7
5,358 + GFF6566 0.16 -1.5
5,358 + GFF6566 0.16 -1.1
5,358 + GFF6566 0.16 -2.3
5,359 - GFF6566 0.16 +1.2
5,359 - GFF6566 0.16 -0.8
5,395 + GFF6566 0.17 +0.6
5,539 - GFF6566 0.23 +0.1
5,539 - GFF6566 0.23 -1.4
5,574 + GFF6566 0.24 +1.0
5,574 + GFF6566 0.24 -1.0
5,575 - GFF6566 0.24 -1.2
5,601 + GFF6566 0.25 -1.4

Or see this region's nucleotide sequence