Strain Fitness in Variovorax sp. SCN45 around GFF6413

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
86,982	+		GFF6412	0.22	+0.1
86,982	+		GFF6412	0.22	+0.2
86,982	+		GFF6412	0.22	-1.7
86,982	+		GFF6412	0.22	-0.2
86,982	+		GFF6412	0.22	+0.1
86,982	+		GFF6412	0.22	+0.3
86,982	+		GFF6412	0.22	-2.0
86,982	+		GFF6412	0.22	+0.1
86,983	-		GFF6412	0.22	-0.1
86,983	-		GFF6412	0.22	-0.5
86,983	-		GFF6412	0.22	-1.3
86,983	-		GFF6412	0.22	-0.1
86,983	-		GFF6412	0.22	+0.2
86,983	-		GFF6412	0.22	+0.7
87,090	+		GFF6412	0.35	-1.4
87,090	+		GFF6412	0.35	-1.9
87,090	+		GFF6412	0.35	-0.3
87,090	+		GFF6412	0.35	-0.8
87,171	+		GFF6412	0.44	-0.9
87,249	+		GFF6412	0.53	+0.3
87,249	+		GFF6412	0.53	-1.0
87,308	-		GFF6412	0.60	-0.5
87,308	-		GFF6412	0.60	+1.1
87,399	+		GFF6412	0.71	-0.8
87,400	-		GFF6412	0.71	-1.6
87,497	+		GFF6412	0.83	-0.1
87,497	+		GFF6412	0.83	-0.7
87,497	+		GFF6412	0.83	-0.9
87,497	+		GFF6412	0.83	-0.3
87,497	+		GFF6412	0.83	+0.1
87,498	-		GFF6412	0.83	-1.9
87,498	-		GFF6412	0.83	+0.2
87,498	-		GFF6412	0.83	-1.2
87,498	-		GFF6412	0.83	-0.8
87,498	-		GFF6412	0.83	-1.0
87,655	+				+0.1
87,655	+				-0.5
87,655	+				-0.3
87,655	+				+0.1
87,655	+				-0.1
87,655	+				+2.6
87,655	+				+0.3
87,656	-				+1.1
87,656	-				-0.3
87,656	-				+0.5
87,656	-				+0.7
87,656	-				-0.1
87,656	-				+0.5
87,656	-				-0.7
87,656	-				-1.4
87,656	-				-0.0
87,656	-				-2.9
87,656	-				-0.7
87,656	-				+0.2
87,656	-				+0.1
87,873	-		GFF6413	0.23	+1.6
87,916	+		GFF6413	0.27	-0.8
87,916	+		GFF6413	0.27	+0.4
87,916	+		GFF6413	0.27	+0.9
88,060	+		GFF6413	0.42	+0.1
88,060	+		GFF6413	0.42	+0.1
88,060	+		GFF6413	0.42	+2.1
88,060	+		GFF6413	0.42	-0.2
88,061	-		GFF6413	0.42	-0.5
88,061	-		GFF6413	0.42	-1.8
88,061	-		GFF6413	0.42	+0.5
88,061	-		GFF6413	0.42	+0.2
88,061	-		GFF6413	0.42	-0.8
88,069	+		GFF6413	0.43	+1.1
88,069	+		GFF6413	0.43	+0.2
88,069	+		GFF6413	0.43	-0.6
88,069	+		GFF6413	0.43	+2.2
88,069	+		GFF6413	0.43	-1.0
88,069	+		GFF6413	0.43	-0.3
88,069	+		GFF6413	0.43	+0.1
88,069	+		GFF6413	0.43	-1.4
88,069	+		GFF6413	0.43	-0.7
88,070	-		GFF6413	0.43	-0.3
88,070	-		GFF6413	0.43	+0.1
88,070	-		GFF6413	0.43	+0.8
88,070	-		GFF6413	0.43	+1.5
88,070	-		GFF6413	0.43	-2.7
88,070	-		GFF6413	0.43	-0.3
88,070	-		GFF6413	0.43	-1.6
88,070	-		GFF6413	0.43	-0.4
88,070	-		GFF6413	0.43	-1.4
88,070	-		GFF6413	0.43	+0.6
88,070	-		GFF6413	0.43	-0.8
88,070	-		GFF6413	0.43	+0.8
88,070	-		GFF6413	0.43	-0.8
88,070	-		GFF6413	0.43	+1.3
88,070	-		GFF6413	0.43	-0.7
88,070	-		GFF6413	0.43	+0.5
88,195	+		GFF6413	0.56	-0.5
88,195	+		GFF6413	0.56	-0.7
88,195	+		GFF6413	0.56	+1.6
88,196	-		GFF6413	0.56	-0.0
88,196	-		GFF6413	0.56	-1.1
88,291	+		GFF6413	0.66	-0.2
88,292	-		GFF6413	0.66	+1.1
88,608	+				+0.4
88,608	+				+0.7
88,608	+				-1.3
88,608	+				-0.2
88,608	+				+0.2
88,608	+				-0.6
88,608	+				-0.8
88,608	+				+0.9
88,609	-				+0.5
88,609	-				-0.3
88,609	-				-0.9
88,609	-				+0.6
88,609	-				+0.8
88,609	-				-0.8
88,629	+				-0.1
88,629	+				-0.5
88,629	+				+0.1
88,723	+				+1.1
88,723	+				-0.2
88,724	-				+0.2
88,724	-				-0.2
88,726	-				-0.5
88,726	-				-0.0
88,727	+				-0.3
88,727	+				+0.3
88,728	-				-1.5
88,728	-				+0.2
88,791	-		GFF6414	0.19	-0.3
88,976	-				-1.1
88,996	-				-0.9
89,097	+				-1.9
89,097	+				-0.9
89,097	+				-0.1
89,097	+				-0.6
89,097	+				+0.1
89,097	+				-0.6
89,098	-				-1.1
89,298	+		GFF6415	0.15	-0.2
89,298	+		GFF6415	0.15	-1.5
89,299	-		GFF6415	0.15	-0.2
89,437	-		GFF6415	0.23	-1.9
89,466	+		GFF6415	0.24	-1.2
89,466	+		GFF6415	0.24	+0.3
89,467	-		GFF6415	0.24	-0.6
89,467	-		GFF6415	0.24	+0.5
89,467	-		GFF6415	0.24	-0.9
89,595	+		GFF6415	0.31	+1.1
89,595	+		GFF6415	0.31	-1.0
89,596	-		GFF6415	0.31	-0.6
89,596	-		GFF6415	0.31	-0.3
89,596	-		GFF6415	0.31	+0.9
89,596	-		GFF6415	0.31	-0.1
89,596	-		GFF6415	0.31	-0.1
89,596	-		GFF6415	0.31	-1.2
89,596	-		GFF6415	0.31	+2.1