Strain Fitness in Variovorax sp. SCN45 around GFF6390

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6389 and GFF6390 are separated by 9 nucleotidesGFF6390 and GFF6391 overlap by 4 nucleotidesGFF6391 and GFF6392 overlap by 4 nucleotides GFF6389 - Amidohydrolase domain protein, at 61,667 to 62,866 GFF6389 GFF6390 - GtrA-like protein, at 62,876 to 63,277 GFF6390 GFF6391 - RfbJ protein, at 63,274 to 64,242 GFF6391 GFF6392 - hypothetical protein, at 64,239 to 66,074 GFF6392 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 62.213 kb on + strand, within GFF6389at 62.249 kb on + strand, within GFF6389at 62.250 kb on - strand, within GFF6389at 62.368 kb on + strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.369 kb on - strand, within GFF6389at 62.908 kb on - strandat 62.908 kb on - strandat 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.009 kb on + strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.010 kb on - strand, within GFF6390at 63.018 kb on + strand, within GFF6390at 63.018 kb on + strand, within GFF6390at 63.019 kb on - strand, within GFF6390at 63.019 kb on - strand, within GFF6390at 63.055 kb on - strand, within GFF6390at 63.055 kb on - strand, within GFF6390at 63.063 kb on + strand, within GFF6390at 63.063 kb on + strand, within GFF6390at 63.064 kb on - strand, within GFF6390at 63.064 kb on - strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.111 kb on + strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.112 kb on - strand, within GFF6390at 63.175 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.202 kb on - strand, within GFF6390at 63.314 kb on + strandat 63.314 kb on + strandat 63.314 kb on + strandat 63.315 kb on - strandat 63.315 kb on - strandat 63.315 kb on - strandat 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.455 kb on + strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.456 kb on - strand, within GFF6391at 63.514 kb on + strand, within GFF6391at 63.591 kb on - strand, within GFF6391at 63.632 kb on + strand, within GFF6391at 63.632 kb on + strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.633 kb on - strand, within GFF6391at 63.653 kb on + strand, within GFF6391at 63.653 kb on + strand, within GFF6391at 63.654 kb on - strand, within GFF6391at 63.848 kb on + strand, within GFF6391at 63.950 kb on + strand, within GFF6391at 63.951 kb on - strand, within GFF6391at 63.951 kb on - strand, within GFF6391at 63.977 kb on + strand, within GFF6391at 63.977 kb on + strand, within GFF6391at 63.978 kb on - strand, within GFF6391at 63.978 kb on - strand, within GFF6391at 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.181 kb on + strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.182 kb on - strandat 64.260 kb on - strandat 64.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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62,213 + GFF6389 0.46 -0.6
62,249 + GFF6389 0.48 -0.5
62,250 - GFF6389 0.49 -0.1
62,368 + GFF6389 0.58 -0.4
62,369 - GFF6389 0.58 +0.1
62,369 - GFF6389 0.58 +0.1
62,369 - GFF6389 0.58 -0.4
62,908 - +0.2
62,908 - -1.4
63,009 + GFF6390 0.33 -0.9
63,009 + GFF6390 0.33 +0.1
63,009 + GFF6390 0.33 +2.5
63,009 + GFF6390 0.33 -0.5
63,009 + GFF6390 0.33 -0.2
63,009 + GFF6390 0.33 +0.7
63,009 + GFF6390 0.33 -0.8
63,009 + GFF6390 0.33 -1.9
63,010 - GFF6390 0.33 -1.5
63,010 - GFF6390 0.33 -2.1
63,010 - GFF6390 0.33 +2.1
63,010 - GFF6390 0.33 -0.3
63,018 + GFF6390 0.35 -0.8
63,018 + GFF6390 0.35 -1.3
63,019 - GFF6390 0.36 -0.5
63,019 - GFF6390 0.36 -0.7
63,055 - GFF6390 0.45 -2.5
63,055 - GFF6390 0.45 +0.2
63,063 + GFF6390 0.47 +0.2
63,063 + GFF6390 0.47 -0.5
63,064 - GFF6390 0.47 -0.1
63,064 - GFF6390 0.47 +1.2
63,111 + GFF6390 0.58 -0.2
63,111 + GFF6390 0.58 -0.8
63,111 + GFF6390 0.58 -0.3
63,112 - GFF6390 0.59 -0.8
63,112 - GFF6390 0.59 -0.2
63,112 - GFF6390 0.59 -0.1
63,175 - GFF6390 0.74 +0.8
63,202 - GFF6390 0.81 +0.9
63,202 - GFF6390 0.81 +0.6
63,202 - GFF6390 0.81 +0.2
63,314 + -0.2
63,314 + -1.3
63,314 + -0.3
63,315 - -0.5
63,315 - -0.5
63,315 - -0.7
63,455 + GFF6391 0.19 -0.7
63,455 + GFF6391 0.19 -0.3
63,455 + GFF6391 0.19 -0.1
63,455 + GFF6391 0.19 -1.1
63,455 + GFF6391 0.19 -1.9
63,455 + GFF6391 0.19 +0.9
63,455 + GFF6391 0.19 -0.1
63,456 - GFF6391 0.19 +0.8
63,456 - GFF6391 0.19 +1.4
63,456 - GFF6391 0.19 -1.4
63,456 - GFF6391 0.19 -0.6
63,456 - GFF6391 0.19 +1.2
63,456 - GFF6391 0.19 -0.8
63,456 - GFF6391 0.19 -1.1
63,456 - GFF6391 0.19 -0.8
63,456 - GFF6391 0.19 +0.3
63,456 - GFF6391 0.19 -0.7
63,514 + GFF6391 0.25 -0.5
63,591 - GFF6391 0.33 +0.3
63,632 + GFF6391 0.37 -0.7
63,632 + GFF6391 0.37 -0.0
63,633 - GFF6391 0.37 -0.3
63,633 - GFF6391 0.37 +0.1
63,633 - GFF6391 0.37 -0.4
63,633 - GFF6391 0.37 +0.3
63,633 - GFF6391 0.37 +0.7
63,653 + GFF6391 0.39 -0.8
63,653 + GFF6391 0.39 -0.9
63,654 - GFF6391 0.39 +0.5
63,848 + GFF6391 0.59 -0.2
63,950 + GFF6391 0.70 +0.5
63,951 - GFF6391 0.70 +0.1
63,951 - GFF6391 0.70 -0.9
63,977 + GFF6391 0.73 +0.7
63,977 + GFF6391 0.73 +0.3
63,978 - GFF6391 0.73 +0.2
63,978 - GFF6391 0.73 -0.2
64,181 + -1.1
64,181 + +1.5
64,181 + -0.5
64,181 + -0.6
64,181 + -2.3
64,182 - +0.6
64,182 - +0.5
64,182 - -0.4
64,182 - +0.6
64,182 - -0.6
64,182 - -0.7
64,182 - -0.5
64,182 - +0.1
64,182 - +1.6
64,260 - +0.6
64,264 + -1.8

Or see this region's nucleotide sequence