Strain Fitness in Variovorax sp. SCN45 around GFF6071

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
132,247	+		GFF6070	0.43	-0.5
132,247	+		GFF6070	0.43	+0.0
132,247	+		GFF6070	0.43	+0.3
132,253	+		GFF6070	0.43	-0.7
132,253	+		GFF6070	0.43	-0.7
132,253	+		GFF6070	0.43	+0.6
132,253	+		GFF6070	0.43	+1.6
132,254	-		GFF6070	0.43	+0.8
132,254	-		GFF6070	0.43	+1.1
132,254	-		GFF6070	0.43	-1.0
132,419	-		GFF6070	0.53	-0.8
132,454	+		GFF6070	0.56	+2.0
132,454	+		GFF6070	0.56	+0.5
132,535	+		GFF6070	0.61	-0.3
132,536	-		GFF6070	0.61	+1.4
132,536	-		GFF6070	0.61	-0.2
132,536	-		GFF6070	0.61	+1.8
132,538	+		GFF6070	0.61	-0.2
132,538	+		GFF6070	0.61	+0.9
132,538	+		GFF6070	0.61	-1.1
132,539	-		GFF6070	0.61	-0.2
132,539	-		GFF6070	0.61	+1.6
132,539	-		GFF6070	0.61	-1.2
132,539	-		GFF6070	0.61	+0.4
132,539	-		GFF6070	0.61	-0.5
132,718	+		GFF6070	0.72	-0.7
132,871	+		GFF6070	0.81	+0.3
132,871	+		GFF6070	0.81	+1.3
132,872	-		GFF6070	0.82	-0.5
132,872	-		GFF6070	0.82	-0.3
132,886	+		GFF6070	0.82	-0.5
132,886	+		GFF6070	0.82	-1.1
132,886	+		GFF6070	0.82	-0.1
132,886	+		GFF6070	0.82	-1.4
132,886	+		GFF6070	0.82	+0.1
132,887	-		GFF6070	0.82	-0.5
132,887	-		GFF6070	0.82	-0.4
133,144	+				-0.1
133,144	+				+1.7
133,144	+				+1.2
133,144	+				-0.2
133,144	+				-1.0
133,145	-				+0.2
133,145	-				+1.5
133,145	-				+0.8
133,197	-				-1.1
133,406	+		GFF6071	0.22	-0.2
133,406	+		GFF6071	0.22	-1.4
133,406	+		GFF6071	0.22	+0.3
133,407	-		GFF6071	0.22	+0.8
133,407	-		GFF6071	0.22	+0.7
133,407	-		GFF6071	0.22	+1.0
133,407	-		GFF6071	0.22	-0.6
133,407	-		GFF6071	0.22	+0.2
133,616	+		GFF6071	0.43	+0.3
133,703	+		GFF6071	0.52	-0.0
133,703	+		GFF6071	0.52	-1.0
133,703	+		GFF6071	0.52	-0.8
133,703	+		GFF6071	0.52	-0.5
133,703	+		GFF6071	0.52	-0.2
133,703	+		GFF6071	0.52	-1.3
133,704	-		GFF6071	0.52	+0.4
133,704	-		GFF6071	0.52	+0.0
133,904	+		GFF6071	0.73	+0.9
133,904	+		GFF6071	0.73	-0.2
133,904	+		GFF6071	0.73	-0.4
133,905	-		GFF6071	0.73	+0.8
134,204	+				+1.8
134,204	+				-0.2
134,204	+				+0.4
134,204	+				+2.3
134,204	+				-1.9
134,204	+				-0.2
134,204	+				-0.0
134,204	+				-0.0
134,204	+				-1.6
134,204	+				-1.6
134,204	+				-1.5
134,204	+				+1.2
134,204	+				+0.5
134,204	+				-0.5
134,204	+				-0.5
134,204	+				+0.6
134,204	+				+0.3
134,205	-				+0.6
134,205	-				+0.3
134,205	-				-0.5
134,205	-				+0.3
134,205	-				+0.8
134,205	-				-1.0
134,205	-				-0.5
134,205	-				+0.5
134,205	-				-1.0
134,205	-				-1.5
134,205	-				+0.8
134,205	-				-1.5
134,205	-				+0.8
134,205	-				-0.5
134,205	-				-0.8
134,205	-				-0.3
134,205	-				+0.3
134,205	-				-0.2
134,205	-				-0.2
134,205	-				+0.8
134,205	-				-0.7
134,250	-				-0.3
134,250	-				+1.4
134,262	+				-0.1
134,929	+		GFF6072	0.72	-0.2
134,930	-		GFF6072	0.72	+0.4
134,930	-		GFF6072	0.72	-2.2
134,930	-		GFF6072	0.72	+0.2
134,930	-		GFF6072	0.72	-0.2
135,016	+		GFF6072	0.81	-0.3
135,017	-		GFF6072	0.81	-0.5
135,017	-		GFF6072	0.81	-0.2
135,017	-		GFF6072	0.81	-0.2
135,017	-		GFF6072	0.81	+1.0
135,095	+		GFF6072	0.90	-0.5
135,095	+		GFF6072	0.90	-1.0
135,096	-		GFF6072	0.90	+1.2