Strain Fitness in Variovorax sp. SCN45 around GFF6060

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
120,607	+		GFF6058	0.85	+0.5
120,608	-		GFF6058	0.85	+0.1
120,608	-		GFF6058	0.85	-0.5
120,625	+		GFF6058	0.87	-0.2
120,625	+		GFF6058	0.87	-0.3
120,625	+		GFF6058	0.87	+0.5
120,625	+		GFF6058	0.87	-1.0
120,625	+		GFF6058	0.87	+0.1
120,626	-		GFF6058	0.87	-0.3
120,626	-		GFF6058	0.87	+0.1
120,626	-		GFF6058	0.87	-0.6
120,857	+		GFF6059	0.13	-0.5
120,858	-		GFF6059	0.13	+0.4
120,858	-		GFF6059	0.13	-0.3
120,868	+		GFF6059	0.15	-0.8
120,868	+		GFF6059	0.15	+0.5
120,869	-		GFF6059	0.15	+0.8
120,928	+		GFF6059	0.22	-0.1
121,010	-		GFF6059	0.32	-0.9
121,010	-		GFF6059	0.32	-2.4
121,010	-		GFF6059	0.32	+1.5
121,333	-		GFF6059	0.72	+0.2
121,432	+		GFF6059	0.85	-1.0
121,432	+		GFF6059	0.85	+1.5
121,432	+		GFF6059	0.85	+0.3
121,432	+		GFF6059	0.85	-0.7
121,432	+		GFF6059	0.85	-0.2
121,432	+		GFF6059	0.85	-0.0
121,432	+		GFF6059	0.85	-0.4
121,432	+		GFF6059	0.85	-0.7
121,433	-		GFF6059	0.85	-0.2
121,433	-		GFF6059	0.85	-1.4
121,433	-		GFF6059	0.85	+0.6
121,433	-		GFF6059	0.85	+0.1
121,433	-		GFF6059	0.85	-0.9
121,433	-		GFF6059	0.85	+1.0
121,433	-		GFF6059	0.85	+0.1
121,465	+		GFF6059	0.89	-0.5
121,516	+				+0.8
121,516	+				+0.2
121,517	-				-0.7
121,517	-				-0.6
121,592	+				-0.6
121,592	+				+0.0
121,592	+				+0.3
121,593	-				+0.5
121,593	-				-0.5
121,811	+		GFF6060	0.25	+1.8
121,811	+		GFF6060	0.25	-1.3
121,812	-		GFF6060	0.25	-0.4
121,812	-		GFF6060	0.25	-0.6
122,689	+				+0.8
122,689	+				-0.7
122,690	-				+0.2
122,690	-				+0.6
122,713	+		GFF6061	0.12	-1.3
122,812	+		GFF6061	0.24	-0.4
122,813	-		GFF6061	0.24	-0.2
122,857	+		GFF6061	0.29	+0.6
122,857	+		GFF6061	0.29	+0.6
122,857	+		GFF6061	0.29	-0.4
122,920	+		GFF6061	0.36	+0.1
122,920	+		GFF6061	0.36	-1.3
122,920	+		GFF6061	0.36	-0.4
122,921	-		GFF6061	0.37	-0.5
122,921	-		GFF6061	0.37	-0.3
122,921	-		GFF6061	0.37	-0.1
123,417	+				-0.2
123,518	+				-1.9
123,543	+				-1.1
123,543	+				-0.7
123,543	+				+0.6
123,543	+				-1.3
123,544	-				+0.5
123,544	-				+0.7
123,544	-				-1.2
123,544	-				+0.9
123,544	-				-0.1
123,544	-				-0.2
123,544	-				-0.0
123,583	+				+1.2
123,598	+				-1.4