Strain Fitness in Variovorax sp. SCN45 around GFF5924

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
138,435	+		GFF5922	0.89	-0.5
138,435	+		GFF5922	0.89	-0.1
138,435	+		GFF5922	0.89	-1.8
138,477	-				-0.1
138,602	+				+1.2
138,604	+				-0.2
138,604	+				-1.4
138,605	-				-0.0
138,605	-				+0.9
138,605	-				+2.4
138,605	-				-2.0
138,664	-				-0.3
138,698	+				+0.2
138,698	+				-1.0
138,705	+				-0.6
138,705	+				+1.7
138,706	-				+0.7
138,706	-				-1.4
138,706	-				+1.3
138,706	-				-1.1
139,041	+		GFF5924	0.14	-0.7
139,042	-		GFF5924	0.14	+0.4
139,042	-		GFF5924	0.14	+0.6
139,042	-		GFF5924	0.14	+0.3
140,172	+				-1.6
140,172	+				+0.7
140,173	-				+0.3
140,173	-				-1.1
140,257	-		GFF5925	0.10	-0.5
140,257	-		GFF5925	0.10	+0.2
140,257	-		GFF5925	0.10	-0.8
140,319	+		GFF5925	0.17	-1.1
140,319	+		GFF5925	0.17	-0.3
140,320	-		GFF5925	0.18	-0.9
140,343	+		GFF5925	0.20	-0.5
140,343	+		GFF5925	0.20	-1.2
140,343	+		GFF5925	0.20	+0.8
140,344	-		GFF5925	0.20	-0.3
140,344	-		GFF5925	0.20	-2.4
140,464	-		GFF5925	0.34	-1.4
140,547	+		GFF5925	0.43	-0.5
140,580	+		GFF5925	0.47	-0.4
140,580	+		GFF5925	0.47	-2.3
140,580	+		GFF5925	0.47	+0.9
140,799	+		GFF5925	0.72	-0.6
140,800	-		GFF5925	0.72	-0.4
140,800	-		GFF5925	0.72	+0.1
140,916	+		GFF5925	0.85	-1.3
140,917	-		GFF5925	0.85	+0.4
140,983	-				-0.3