Strain Fitness in Variovorax sp. SCN45 around GFF5255

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5254 and GFF5255 are separated by 157 nucleotidesGFF5255 and GFF5256 are separated by 22 nucleotides GFF5254 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 118,801 to 120,384 GFF5254 GFF5255 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 120,542 to 121,453 GFF5255 GFF5256 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 121,476 to 122,546 GFF5256 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.659 kb on + strand, within GFF5254at 119.659 kb on + strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.660 kb on - strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.716 kb on + strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.717 kb on - strand, within GFF5254at 119.839 kb on + strand, within GFF5254at 119.839 kb on + strand, within GFF5254at 119.840 kb on - strand, within GFF5254at 119.840 kb on - strand, within GFF5254at 119.926 kb on + strand, within GFF5254at 119.927 kb on - strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.019 kb on + strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.020 kb on - strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.055 kb on + strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.056 kb on - strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.082 kb on + strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.083 kb on - strand, within GFF5254at 120.160 kb on + strand, within GFF5254at 120.160 kb on + strand, within GFF5254at 120.355 kb on + strandat 120.355 kb on + strandat 120.355 kb on + strandat 120.355 kb on + strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.356 kb on - strandat 120.464 kb on + strandat 120.464 kb on + strandat 120.464 kb on + strandat 120.465 kb on - strandat 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.758 kb on + strand, within GFF5255at 120.759 kb on - strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.809 kb on + strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.810 kb on - strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.933 kb on + strand, within GFF5255at 120.934 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.077 kb on - strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.124 kb on + strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.125 kb on - strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.331 kb on + strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.332 kb on - strand, within GFF5255at 121.791 kb on + strand, within GFF5256at 121.791 kb on + strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 121.792 kb on - strand, within GFF5256at 122.018 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.157 kb on + strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.158 kb on - strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.220 kb on + strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.221 kb on - strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.331 kb on + strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256at 122.332 kb on - strand, within GFF5256

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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119,659 + GFF5254 0.54 -0.1
119,659 + GFF5254 0.54 +0.5
119,660 - GFF5254 0.54 -0.1
119,660 - GFF5254 0.54 +0.1
119,716 + GFF5254 0.58 -0.1
119,716 + GFF5254 0.58 -1.4
119,717 - GFF5254 0.58 -1.5
119,717 - GFF5254 0.58 -0.3
119,717 - GFF5254 0.58 -1.8
119,717 - GFF5254 0.58 -0.2
119,839 + GFF5254 0.66 -0.3
119,839 + GFF5254 0.66 -0.8
119,840 - GFF5254 0.66 -0.6
119,840 - GFF5254 0.66 -0.8
119,926 + GFF5254 0.71 -0.7
119,927 - GFF5254 0.71 +1.5
120,019 + GFF5254 0.77 -0.3
120,019 + GFF5254 0.77 -0.2
120,019 + GFF5254 0.77 +2.2
120,019 + GFF5254 0.77 -0.1
120,019 + GFF5254 0.77 +0.0
120,019 + GFF5254 0.77 -0.3
120,020 - GFF5254 0.77 +0.3
120,020 - GFF5254 0.77 -0.5
120,020 - GFF5254 0.77 -0.3
120,020 - GFF5254 0.77 -1.6
120,020 - GFF5254 0.77 +0.1
120,020 - GFF5254 0.77 +0.5
120,020 - GFF5254 0.77 -0.1
120,020 - GFF5254 0.77 +0.2
120,020 - GFF5254 0.77 +0.1
120,020 - GFF5254 0.77 +1.0
120,055 + GFF5254 0.79 -1.8
120,055 + GFF5254 0.79 -0.2
120,055 + GFF5254 0.79 -0.1
120,055 + GFF5254 0.79 +1.1
120,055 + GFF5254 0.79 -0.1
120,056 - GFF5254 0.79 -0.2
120,056 - GFF5254 0.79 -1.8
120,056 - GFF5254 0.79 +0.3
120,056 - GFF5254 0.79 -0.6
120,056 - GFF5254 0.79 +0.9
120,056 - GFF5254 0.79 -0.4
120,056 - GFF5254 0.79 -0.4
120,056 - GFF5254 0.79 +0.2
120,082 + GFF5254 0.81 -0.5
120,082 + GFF5254 0.81 -0.4
120,082 + GFF5254 0.81 +0.5
120,082 + GFF5254 0.81 +0.0
120,082 + GFF5254 0.81 -0.4
120,083 - GFF5254 0.81 +0.3
120,083 - GFF5254 0.81 -0.9
120,083 - GFF5254 0.81 +0.4
120,083 - GFF5254 0.81 +1.4
120,083 - GFF5254 0.81 -1.3
120,160 + GFF5254 0.86 -0.2
120,160 + GFF5254 0.86 +0.5
120,355 + -0.7
120,355 + -1.3
120,355 + +1.1
120,355 + +0.5
120,356 - +0.1
120,356 - +1.4
120,356 - -0.2
120,356 - -0.4
120,356 - +0.1
120,464 + +0.2
120,464 + +0.1
120,464 + -0.2
120,465 - +0.1
120,758 + GFF5255 0.24 -1.0
120,758 + GFF5255 0.24 -1.1
120,758 + GFF5255 0.24 -0.1
120,759 - GFF5255 0.24 +0.2
120,809 + GFF5255 0.29 -0.0
120,809 + GFF5255 0.29 +0.9
120,809 + GFF5255 0.29 +1.6
120,809 + GFF5255 0.29 -0.5
120,809 + GFF5255 0.29 +0.4
120,809 + GFF5255 0.29 -0.2
120,810 - GFF5255 0.29 -0.1
120,810 - GFF5255 0.29 +0.3
120,810 - GFF5255 0.29 +0.4
120,933 + GFF5255 0.43 -0.8
120,933 + GFF5255 0.43 +1.1
120,934 - GFF5255 0.43 +0.5
121,077 - GFF5255 0.59 -0.0
121,077 - GFF5255 0.59 +0.6
121,077 - GFF5255 0.59 +0.4
121,124 + GFF5255 0.64 +0.1
121,124 + GFF5255 0.64 -2.4
121,124 + GFF5255 0.64 +0.5
121,124 + GFF5255 0.64 +0.1
121,124 + GFF5255 0.64 -0.1
121,124 + GFF5255 0.64 -0.1
121,125 - GFF5255 0.64 -0.3
121,125 - GFF5255 0.64 +1.0
121,125 - GFF5255 0.64 -0.3
121,125 - GFF5255 0.64 +1.7
121,125 - GFF5255 0.64 -0.2
121,125 - GFF5255 0.64 +0.4
121,125 - GFF5255 0.64 -0.3
121,125 - GFF5255 0.64 -0.4
121,125 - GFF5255 0.64 +0.1
121,331 + GFF5255 0.87 -0.7
121,331 + GFF5255 0.87 +0.3
121,332 - GFF5255 0.87 -0.9
121,332 - GFF5255 0.87 -0.3
121,332 - GFF5255 0.87 -1.8
121,791 + GFF5256 0.29 +0.9
121,791 + GFF5256 0.29 +0.7
121,792 - GFF5256 0.30 +0.9
121,792 - GFF5256 0.30 -0.4
121,792 - GFF5256 0.30 -0.0
121,792 - GFF5256 0.30 -2.0
122,018 + GFF5256 0.51 +1.0
122,157 + GFF5256 0.64 -0.1
122,157 + GFF5256 0.64 +0.1
122,157 + GFF5256 0.64 -0.8
122,157 + GFF5256 0.64 +0.1
122,157 + GFF5256 0.64 -0.1
122,157 + GFF5256 0.64 -1.6
122,157 + GFF5256 0.64 -0.8
122,157 + GFF5256 0.64 -0.1
122,157 + GFF5256 0.64 -0.2
122,157 + GFF5256 0.64 +0.5
122,157 + GFF5256 0.64 -0.3
122,157 + GFF5256 0.64 +0.5
122,157 + GFF5256 0.64 -1.5
122,157 + GFF5256 0.64 +0.3
122,157 + GFF5256 0.64 +0.9
122,157 + GFF5256 0.64 +0.2
122,157 + GFF5256 0.64 +0.2
122,158 - GFF5256 0.64 -0.3
122,158 - GFF5256 0.64 +0.6
122,158 - GFF5256 0.64 +0.3
122,158 - GFF5256 0.64 +1.1
122,158 - GFF5256 0.64 +0.1
122,158 - GFF5256 0.64 +0.1
122,158 - GFF5256 0.64 +0.4
122,158 - GFF5256 0.64 +0.6
122,158 - GFF5256 0.64 -0.1
122,220 + GFF5256 0.69 -1.1
122,220 + GFF5256 0.69 -0.1
122,220 + GFF5256 0.69 -1.7
122,221 - GFF5256 0.70 +0.5
122,221 - GFF5256 0.70 -1.2
122,221 - GFF5256 0.70 -0.5
122,331 + GFF5256 0.80 +0.4
122,331 + GFF5256 0.80 -0.6
122,331 + GFF5256 0.80 +0.5
122,331 + GFF5256 0.80 -0.5
122,331 + GFF5256 0.80 -1.9
122,332 - GFF5256 0.80 +0.0
122,332 - GFF5256 0.80 +0.0
122,332 - GFF5256 0.80 -0.6
122,332 - GFF5256 0.80 -0.1
122,332 - GFF5256 0.80 -0.7
122,332 - GFF5256 0.80 -1.8

Or see this region's nucleotide sequence