Strain Fitness in Variovorax sp. SCN45 around GFF5136

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5135 and GFF5136 are separated by 87 nucleotidesGFF5136 and GFF5137 are separated by 1 nucleotidesGFF5137 and GFF5138 are separated by 106 nucleotidesGFF5138 and GFF5139 are separated by 104 nucleotides GFF5135 - DNA repair exonuclease family protein YhaO, at 237,153 to 238,409 GFF5135 GFF5136 - Putative DNA helicase, at 238,497 to 243,143 GFF5136 GFF5137 - no description, at 243,145 to 243,342 GFF5137 GFF5138 - no description, at 243,449 to 243,592 GFF5138 GFF5139 - no description, at 243,697 to 244,518 GFF5139 Position (kb) 238 239 240 241 242 243 244Strain fitness (log2 ratio) -2 -1 0 1at 237.680 kb on - strand, within GFF5135at 237.680 kb on - strand, within GFF5135at 237.814 kb on + strand, within GFF5135at 237.815 kb on - strand, within GFF5135at 237.815 kb on - strand, within GFF5135at 237.841 kb on + strand, within GFF5135at 237.848 kb on - strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.904 kb on + strand, within GFF5135at 237.905 kb on - strand, within GFF5135at 237.905 kb on - strand, within GFF5135at 237.921 kb on - strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.940 kb on + strand, within GFF5135at 237.941 kb on - strand, within GFF5135at 237.943 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.207 kb on + strand, within GFF5135at 238.342 kb on + strandat 238.342 kb on + strandat 238.438 kb on + strandat 238.438 kb on + strandat 238.439 kb on - strandat 238.439 kb on - strandat 238.442 kb on + strandat 238.442 kb on + strandat 238.442 kb on + strandat 238.443 kb on - strandat 238.443 kb on - strandat 238.443 kb on - strandat 238.512 kb on + strandat 238.551 kb on - strandat 238.837 kb on + strandat 238.838 kb on - strandat 238.838 kb on - strandat 238.940 kb on - strandat 238.963 kb on + strand, within GFF5136at 238.963 kb on + strand, within GFF5136at 238.963 kb on + strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 238.964 kb on - strand, within GFF5136at 239.119 kb on + strand, within GFF5136at 239.119 kb on + strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.120 kb on - strand, within GFF5136at 239.551 kb on + strand, within GFF5136at 239.551 kb on + strand, within GFF5136at 239.551 kb on + strand, within GFF5136at 239.552 kb on - strand, within GFF5136at 239.552 kb on - strand, within GFF5136at 239.647 kb on + strand, within GFF5136at 239.648 kb on - strand, within GFF5136at 239.667 kb on + strand, within GFF5136at 239.668 kb on - strand, within GFF5136at 239.681 kb on - strand, within GFF5136at 240.019 kb on + strand, within GFF5136at 240.019 kb on + strand, within GFF5136at 240.019 kb on + strand, within GFF5136at 240.019 kb on + strand, within GFF5136at 240.020 kb on - strand, within GFF5136at 240.020 kb on - strand, within GFF5136at 240.020 kb on - strand, within GFF5136at 240.650 kb on + strand, within GFF5136at 240.820 kb on + strand, within GFF5136at 240.820 kb on + strand, within GFF5136at 240.820 kb on + strand, within GFF5136at 241.427 kb on + strand, within GFF5136at 241.849 kb on + strand, within GFF5136at 241.850 kb on - strand, within GFF5136at 241.850 kb on - strand, within GFF5136at 241.963 kb on + strand, within GFF5136at 241.963 kb on + strand, within GFF5136at 241.963 kb on + strand, within GFF5136at 241.964 kb on - strand, within GFF5136at 241.964 kb on - strand, within GFF5136at 241.964 kb on - strand, within GFF5136at 242.254 kb on + strand, within GFF5136at 242.551 kb on + strand, within GFF5136at 242.552 kb on - strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.555 kb on + strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.556 kb on - strand, within GFF5136at 242.634 kb on + strand, within GFF5136at 242.635 kb on - strand, within GFF5136at 242.653 kb on + strand, within GFF5136at 242.654 kb on - strand, within GFF5136at 242.654 kb on - strand, within GFF5136at 242.716 kb on + strandat 242.717 kb on - strandat 242.717 kb on - strandat 243.039 kb on + strandat 243.040 kb on - strandat 243.040 kb on - strandat 243.040 kb on - strandat 243.106 kb on + strandat 243.106 kb on + strandat 243.106 kb on + strandat 243.107 kb on - strandat 243.107 kb on - strandat 243.322 kb on + strand, within GFF5137at 243.322 kb on + strand, within GFF5137at 243.323 kb on - strandat 243.323 kb on - strandat 243.323 kb on - strandat 243.323 kb on - strandat 243.404 kb on + strandat 243.404 kb on + strandat 243.405 kb on - strandat 243.405 kb on - strandat 243.406 kb on + strandat 243.407 kb on - strandat 243.413 kb on + strandat 243.414 kb on - strandat 243.419 kb on + strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.420 kb on - strandat 243.426 kb on + strandat 243.427 kb on - strandat 243.427 kb on - strandat 243.427 kb on - strandat 243.455 kb on + strandat 243.456 kb on - strandat 243.610 kb on - strandat 243.610 kb on - strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.731 kb on + strandat 243.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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237,680 - GFF5135 0.42 +0.4
237,680 - GFF5135 0.42 -0.2
237,814 + GFF5135 0.53 +0.7
237,815 - GFF5135 0.53 -0.1
237,815 - GFF5135 0.53 +0.2
237,841 + GFF5135 0.55 -0.5
237,848 - GFF5135 0.55 +0.4
237,904 + GFF5135 0.60 -0.1
237,904 + GFF5135 0.60 +0.0
237,904 + GFF5135 0.60 +0.8
237,904 + GFF5135 0.60 -1.8
237,904 + GFF5135 0.60 +0.2
237,904 + GFF5135 0.60 -0.3
237,904 + GFF5135 0.60 -0.5
237,904 + GFF5135 0.60 -1.6
237,905 - GFF5135 0.60 -1.0
237,905 - GFF5135 0.60 -0.1
237,921 - GFF5135 0.61 -0.4
237,940 + GFF5135 0.63 -0.2
237,940 + GFF5135 0.63 +0.2
237,940 + GFF5135 0.63 +0.1
237,940 + GFF5135 0.63 -0.2
237,941 - GFF5135 0.63 +0.1
237,943 + GFF5135 0.63 +0.6
238,207 + GFF5135 0.84 +0.1
238,207 + GFF5135 0.84 -0.2
238,207 + GFF5135 0.84 -1.0
238,342 + -1.5
238,342 + +0.4
238,438 + +1.5
238,438 + -0.7
238,439 - -1.3
238,439 - +0.1
238,442 + -0.1
238,442 + +0.2
238,442 + -2.4
238,443 - -0.8
238,443 - -0.5
238,443 - +0.9
238,512 + -0.2
238,551 - +0.1
238,837 + -1.6
238,838 - -0.4
238,838 - +0.1
238,940 - -1.5
238,963 + GFF5136 0.10 -0.0
238,963 + GFF5136 0.10 +0.1
238,963 + GFF5136 0.10 -1.8
238,964 - GFF5136 0.10 -0.3
238,964 - GFF5136 0.10 +0.2
238,964 - GFF5136 0.10 -0.2
239,119 + GFF5136 0.13 +0.2
239,119 + GFF5136 0.13 -0.3
239,120 - GFF5136 0.13 -0.9
239,120 - GFF5136 0.13 -0.7
239,120 - GFF5136 0.13 +1.0
239,120 - GFF5136 0.13 +0.0
239,120 - GFF5136 0.13 +0.6
239,551 + GFF5136 0.23 +0.9
239,551 + GFF5136 0.23 -0.0
239,551 + GFF5136 0.23 -1.2
239,552 - GFF5136 0.23 +0.2
239,552 - GFF5136 0.23 +0.6
239,647 + GFF5136 0.25 -1.2
239,648 - GFF5136 0.25 -1.2
239,667 + GFF5136 0.25 -0.9
239,668 - GFF5136 0.25 -1.2
239,681 - GFF5136 0.25 -1.5
240,019 + GFF5136 0.33 +1.1
240,019 + GFF5136 0.33 -0.0
240,019 + GFF5136 0.33 +1.1
240,019 + GFF5136 0.33 +0.2
240,020 - GFF5136 0.33 -0.8
240,020 - GFF5136 0.33 -0.6
240,020 - GFF5136 0.33 +0.6
240,650 + GFF5136 0.46 +0.3
240,820 + GFF5136 0.50 +0.2
240,820 + GFF5136 0.50 +0.0
240,820 + GFF5136 0.50 +0.3
241,427 + GFF5136 0.63 -1.9
241,849 + GFF5136 0.72 +0.8
241,850 - GFF5136 0.72 -2.4
241,850 - GFF5136 0.72 +0.0
241,963 + GFF5136 0.75 +0.0
241,963 + GFF5136 0.75 -0.7
241,963 + GFF5136 0.75 -0.3
241,964 - GFF5136 0.75 +0.5
241,964 - GFF5136 0.75 +1.0
241,964 - GFF5136 0.75 +1.7
242,254 + GFF5136 0.81 -0.3
242,551 + GFF5136 0.87 +1.1
242,552 - GFF5136 0.87 -1.0
242,555 + GFF5136 0.87 +0.1
242,555 + GFF5136 0.87 +0.0
242,555 + GFF5136 0.87 -0.4
242,555 + GFF5136 0.87 +0.7
242,555 + GFF5136 0.87 +0.4
242,555 + GFF5136 0.87 -0.3
242,555 + GFF5136 0.87 +0.3
242,555 + GFF5136 0.87 -0.4
242,556 - GFF5136 0.87 -0.6
242,556 - GFF5136 0.87 -0.1
242,556 - GFF5136 0.87 +0.2
242,556 - GFF5136 0.87 +1.0
242,634 + GFF5136 0.89 -1.2
242,635 - GFF5136 0.89 -1.2
242,653 + GFF5136 0.89 -1.0
242,654 - GFF5136 0.89 -1.1
242,654 - GFF5136 0.89 +0.8
242,716 + -1.7
242,717 - -0.1
242,717 - -0.7
243,039 + -0.4
243,040 - -0.1
243,040 - +0.0
243,040 - +0.3
243,106 + -0.2
243,106 + -1.2
243,106 + +0.1
243,107 - -0.4
243,107 - -0.1
243,322 + GFF5137 0.89 -0.3
243,322 + GFF5137 0.89 -0.4
243,323 - -0.8
243,323 - -0.4
243,323 - +0.3
243,323 - -0.1
243,404 + +0.7
243,404 + -1.3
243,405 - -1.7
243,405 - +0.2
243,406 + -1.6
243,407 - +1.1
243,413 + +0.3
243,414 - +0.5
243,419 + -0.6
243,420 - +0.1
243,420 - -1.3
243,420 - +1.4
243,420 - -0.4
243,420 - -0.8
243,426 + -0.5
243,427 - -0.4
243,427 - +0.5
243,427 - -0.1
243,455 + +1.4
243,456 - +0.0
243,610 - +0.9
243,610 - -1.6
243,731 + +1.0
243,731 + +0.7
243,731 + +1.3
243,731 + -0.4
243,731 + +0.7
243,732 - +0.6

Or see this region's nucleotide sequence