Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5093 and GFF5094 are separated by 2 nucleotides GFF5094 and GFF5095 are separated by 3 nucleotides GFF5095 and GFF5096 are separated by 85 nucleotides
GFF5093 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 195,580 to 197,043
GFF5093
GFF5094 - BUG/TctC family periplasmic protein, at 197,046 to 198,014
GFF5094
GFF5095 - hypothetical protein, at 198,018 to 198,353
GFF5095
GFF5096 - similar to protocatechuate 4,5-dioxygenase beta chain, at 198,439 to 199,266
GFF5096
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.567 kb on + strand, within GFF5093 at 196.568 kb on - strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.660 kb on + strand, within GFF5093 at 196.661 kb on - strand, within GFF5093 at 196.661 kb on - strand, within GFF5093 at 196.795 kb on + strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.811 kb on - strand, within GFF5093 at 196.967 kb on - strand at 196.967 kb on - strand at 197.304 kb on + strand, within GFF5094 at 197.304 kb on + strand, within GFF5094 at 197.368 kb on - strand, within GFF5094 at 197.593 kb on - strand, within GFF5094 at 197.593 kb on - strand, within GFF5094 at 197.770 kb on + strand, within GFF5094 at 197.771 kb on - strand, within GFF5094 at 197.771 kb on - strand, within GFF5094 at 197.970 kb on + strand at 198.183 kb on + strand, within GFF5095 at 198.183 kb on + strand, within GFF5095 at 198.183 kb on + strand, within GFF5095 at 198.183 kb on + strand, within GFF5095 at 198.184 kb on - strand, within GFF5095 at 198.184 kb on - strand, within GFF5095 at 198.252 kb on + strand, within GFF5095 at 198.285 kb on + strand, within GFF5095 at 198.286 kb on - strand, within GFF5095 at 198.286 kb on - strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.309 kb on + strand, within GFF5095 at 198.310 kb on - strand, within GFF5095 at 198.310 kb on - strand, within GFF5095 at 198.310 kb on - strand, within GFF5095 at 198.349 kb on + strand at 198.450 kb on - strand at 198.640 kb on + strand, within GFF5096 at 198.664 kb on + strand, within GFF5096 at 198.664 kb on + strand, within GFF5096 at 198.665 kb on - strand, within GFF5096 at 198.665 kb on - strand, within GFF5096 at 198.758 kb on + strand, within GFF5096 at 198.758 kb on + strand, within GFF5096
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 196,567 + GFF5093 0.67 +0.2 196,568 - GFF5093 0.67 -0.6 196,660 + GFF5093 0.74 +0.1 196,660 + GFF5093 0.74 -0.0 196,660 + GFF5093 0.74 +0.0 196,660 + GFF5093 0.74 -0.3 196,660 + GFF5093 0.74 -0.7 196,661 - GFF5093 0.74 +2.3 196,661 - GFF5093 0.74 +0.0 196,795 + GFF5093 0.83 +0.4 196,811 - GFF5093 0.84 -0.1 196,811 - GFF5093 0.84 -0.3 196,811 - GFF5093 0.84 -0.1 196,811 - GFF5093 0.84 -0.4 196,811 - GFF5093 0.84 -1.6 196,967 - -0.9 196,967 - -1.6 197,304 + GFF5094 0.27 +0.3 197,304 + GFF5094 0.27 +0.0 197,368 - GFF5094 0.33 -0.2 197,593 - GFF5094 0.56 +0.1 197,593 - GFF5094 0.56 -0.3 197,770 + GFF5094 0.75 -1.0 197,771 - GFF5094 0.75 -0.9 197,771 - GFF5094 0.75 +1.0 197,970 + -0.9 198,183 + GFF5095 0.49 -0.3 198,183 + GFF5095 0.49 -1.8 198,183 + GFF5095 0.49 +0.5 198,183 + GFF5095 0.49 +1.0 198,184 - GFF5095 0.49 -1.0 198,184 - GFF5095 0.49 +1.0 198,252 + GFF5095 0.70 +0.5 198,285 + GFF5095 0.79 -0.7 198,286 - GFF5095 0.80 -1.6 198,286 - GFF5095 0.80 -1.1 198,309 + GFF5095 0.87 +2.0 198,309 + GFF5095 0.87 -0.2 198,309 + GFF5095 0.87 -0.4 198,309 + GFF5095 0.87 +0.9 198,309 + GFF5095 0.87 -0.0 198,309 + GFF5095 0.87 -0.2 198,309 + GFF5095 0.87 -0.6 198,309 + GFF5095 0.87 -1.2 198,310 - GFF5095 0.87 -0.5 198,310 - GFF5095 0.87 -0.3 198,310 - GFF5095 0.87 -0.6 198,349 + -0.8 198,450 - -0.2 198,640 + GFF5096 0.24 -2.2 198,664 + GFF5096 0.27 +0.3 198,664 + GFF5096 0.27 -0.5 198,665 - GFF5096 0.27 -0.8 198,665 - GFF5096 0.27 -0.3 198,758 + GFF5096 0.39 +0.4 198,758 + GFF5096 0.39 -0.5
Or see this region's nucleotide sequence