Strain Fitness in Variovorax sp. SCN45 around GFF5043

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
144,345	+		GFF5042	0.57	+0.5
144,345	+		GFF5042	0.57	-0.5
144,346	-		GFF5042	0.57	-0.4
144,346	-		GFF5042	0.57	-1.3
144,654	+		GFF5042	0.90	+0.0
144,654	+		GFF5042	0.90	-1.2
144,654	+		GFF5042	0.90	-0.6
144,669	+				+1.0
144,670	-				+0.1
144,670	-				-0.1
144,755	+				-0.8
144,755	+				-3.3
144,755	+				+0.2
144,756	-				+1.6
144,756	-				-2.5
144,801	-				+0.2
144,832	-				+0.1
144,859	+				+0.4
144,859	+				+0.2
144,859	+				-0.4
144,860	-				-0.6
144,860	-				-1.8
144,878	+				-0.6
144,879	-				-0.9
144,911	-				+0.1
144,911	-				-0.6
144,911	-				+0.1
144,931	+				+0.1
144,931	+				+0.4
144,931	+				+0.7
144,931	+				-0.9
144,931	+				-0.5
144,931	+				-0.9
144,931	+				+0.5
144,931	+				-0.5
144,931	+				-0.0
144,931	+				+0.4
144,931	+				-0.3
144,931	+				+0.8
144,932	-				-0.1
144,932	-				-0.2
144,932	-				-0.4
144,932	-				-0.3
144,932	-				-1.7
145,259	+		GFF5043	0.28	-0.1
145,259	+		GFF5043	0.28	+0.5
145,259	+		GFF5043	0.28	-0.8
145,259	+		GFF5043	0.28	-0.0
145,259	+		GFF5043	0.28	+0.3
145,259	+		GFF5043	0.28	-1.3
145,259	+		GFF5043	0.28	+0.7
145,259	+		GFF5043	0.28	+0.8
145,259	+		GFF5043	0.28	-0.3
145,260	-		GFF5043	0.28	-0.1
145,260	-		GFF5043	0.28	-0.6
145,260	-		GFF5043	0.28	-0.8
145,260	-		GFF5043	0.28	-0.8
145,260	-		GFF5043	0.28	-0.4
145,260	-		GFF5043	0.28	+0.5
145,451	+		GFF5043	0.44	+0.1
145,452	-		GFF5043	0.45	+0.1
145,452	-		GFF5043	0.45	+0.7
145,452	-		GFF5043	0.45	-1.0
145,497	+		GFF5043	0.48	-0.1
145,498	-		GFF5043	0.49	-0.4
145,498	-		GFF5043	0.49	+0.6
145,520	+		GFF5043	0.50	+0.3
145,521	-		GFF5043	0.50	-0.1
145,521	-		GFF5043	0.50	+0.3
145,521	-		GFF5043	0.50	+0.3
145,521	-		GFF5043	0.50	+0.8
145,716	+		GFF5043	0.67	+1.0
145,716	+		GFF5043	0.67	+0.6
145,843	+		GFF5043	0.78	+0.3
145,843	+		GFF5043	0.78	-0.8
145,843	+		GFF5043	0.78	-0.7
145,843	+		GFF5043	0.78	+0.7
145,843	+		GFF5043	0.78	-0.1
145,843	+		GFF5043	0.78	+0.3
145,844	-		GFF5043	0.78	+0.0
145,844	-		GFF5043	0.78	-0.1
145,856	+		GFF5043	0.79	+0.2
145,888	+		GFF5043	0.82	+0.5
145,888	+		GFF5043	0.82	-0.0
145,888	+		GFF5043	0.82	+0.0
145,888	+		GFF5043	0.82	+0.2
145,889	-		GFF5043	0.82	-0.9
145,889	-		GFF5043	0.82	+0.4
145,889	-		GFF5043	0.82	+0.1
145,958	+		GFF5043	0.88	-0.5
145,958	+		GFF5043	0.88	+0.0
145,958	+		GFF5043	0.88	-0.3
145,958	+		GFF5043	0.88	-0.4
145,959	-		GFF5043	0.88	+0.5
145,959	-		GFF5043	0.88	-1.1
145,959	-		GFF5043	0.88	-0.6
145,959	-		GFF5043	0.88	-1.2
145,959	-		GFF5043	0.88	+0.4
145,959	-		GFF5043	0.88	+1.2
146,029	+				+0.2
146,029	+				-0.6
146,030	-				-0.1
146,030	-				-0.6
146,030	-				-0.1
146,030	-				-0.2
146,847	+		GFF5044	0.88	-0.5
146,847	+		GFF5044	0.88	-0.5
146,847	+		GFF5044	0.88	+0.7
146,847	+		GFF5044	0.88	-1.6
146,848	-		GFF5044	0.88	-2.1
146,848	-		GFF5044	0.88	-1.9
146,953	+				+0.1
146,953	+				-0.2
146,953	+				+0.0
146,953	+				-1.2
146,953	+				-0.5
146,953	+				+0.7
146,954	-				+1.0
146,954	-				-1.0
146,957	+				-0.3
146,957	+				-0.4
146,957	+				-0.6
146,957	+				-1.3
146,957	+				-0.7
146,958	-				+0.9
146,958	-				-0.3
146,958	-				+2.0
146,958	-				-1.2
146,958	-				-1.3
146,958	-				-0.0
146,958	-				-0.0
146,958	-				-0.6
146,958	-				-0.5
146,969	-				-0.9
147,076	+		GFF5045	0.12	-0.0