Strain Fitness in Variovorax sp. SCN45 around GFF4985

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4984 and GFF4985 are separated by 83 nucleotidesGFF4985 and GFF4986 are separated by 53 nucleotides GFF4984 - Tricarboxylate transport protein TctC, at 84,532 to 85,509 GFF4984 GFF4985 - Tricarboxylate transport protein TctC, at 85,593 to 86,579 GFF4985 GFF4986 - 3-hydroxybenzoate 6-monooxygenase (EC 1.14.13.24), at 86,633 to 87,856 GFF4986 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.950 kb on + strand, within GFF4984at 84.951 kb on - strand, within GFF4984at 84.951 kb on - strand, within GFF4984at 84.951 kb on - strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.040 kb on + strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.041 kb on - strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.148 kb on + strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.149 kb on - strand, within GFF4984at 85.172 kb on + strand, within GFF4984at 85.187 kb on + strand, within GFF4984at 85.187 kb on + strand, within GFF4984at 85.187 kb on + strand, within GFF4984at 85.187 kb on + strand, within GFF4984at 85.187 kb on + strand, within GFF4984at 85.188 kb on - strand, within GFF4984at 85.188 kb on - strand, within GFF4984at 85.188 kb on - strand, within GFF4984at 85.188 kb on - strand, within GFF4984at 85.555 kb on + strandat 85.555 kb on + strandat 85.555 kb on + strandat 85.555 kb on + strandat 85.556 kb on - strandat 85.556 kb on - strandat 85.556 kb on - strandat 85.556 kb on - strandat 85.556 kb on - strandat 85.556 kb on - strandat 85.594 kb on + strandat 85.595 kb on - strandat 85.595 kb on - strandat 85.633 kb on + strandat 85.633 kb on + strandat 85.633 kb on + strandat 85.634 kb on - strandat 85.634 kb on - strandat 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.910 kb on - strand, within GFF4985at 85.910 kb on - strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.997 kb on - strand, within GFF4985at 85.997 kb on - strand, within GFF4985at 86.104 kb on + strand, within GFF4985at 86.105 kb on - strand, within GFF4985at 86.105 kb on - strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.609 kb on + strandat 86.609 kb on + strandat 86.609 kb on + strandat 86.609 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.692 kb on - strandat 86.692 kb on - strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.847 kb on + strand, within GFF4986at 86.848 kb on - strand, within GFF4986at 86.848 kb on - strand, within GFF4986at 86.946 kb on + strand, within GFF4986at 86.946 kb on + strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.285 kb on - strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
84,950 + GFF4984 0.43 +0.2
84,951 - GFF4984 0.43 +0.1
84,951 - GFF4984 0.43 +0.2
84,951 - GFF4984 0.43 +2.0
85,040 + GFF4984 0.52 +0.1
85,040 + GFF4984 0.52 +0.4
85,040 + GFF4984 0.52 +0.8
85,040 + GFF4984 0.52 -0.2
85,040 + GFF4984 0.52 -1.9
85,040 + GFF4984 0.52 +0.3
85,040 + GFF4984 0.52 +0.6
85,041 - GFF4984 0.52 -2.6
85,041 - GFF4984 0.52 +1.1
85,041 - GFF4984 0.52 -0.1
85,041 - GFF4984 0.52 -0.7
85,041 - GFF4984 0.52 -0.5
85,041 - GFF4984 0.52 +1.1
85,041 - GFF4984 0.52 -0.1
85,041 - GFF4984 0.52 -0.6
85,041 - GFF4984 0.52 -0.2
85,148 + GFF4984 0.63 +0.5
85,148 + GFF4984 0.63 -2.6
85,148 + GFF4984 0.63 +0.1
85,148 + GFF4984 0.63 +1.5
85,148 + GFF4984 0.63 -0.5
85,148 + GFF4984 0.63 -0.4
85,149 - GFF4984 0.63 -0.7
85,149 - GFF4984 0.63 -0.6
85,149 - GFF4984 0.63 -0.5
85,149 - GFF4984 0.63 -0.1
85,149 - GFF4984 0.63 +1.0
85,149 - GFF4984 0.63 -0.5
85,149 - GFF4984 0.63 -0.8
85,149 - GFF4984 0.63 +2.6
85,149 - GFF4984 0.63 -2.1
85,149 - GFF4984 0.63 -0.2
85,149 - GFF4984 0.63 +0.3
85,149 - GFF4984 0.63 +0.0
85,149 - GFF4984 0.63 -0.5
85,149 - GFF4984 0.63 +0.1
85,149 - GFF4984 0.63 -0.2
85,172 + GFF4984 0.65 -0.1
85,187 + GFF4984 0.67 -1.2
85,187 + GFF4984 0.67 +1.4
85,187 + GFF4984 0.67 +0.1
85,187 + GFF4984 0.67 +0.1
85,187 + GFF4984 0.67 -1.5
85,188 - GFF4984 0.67 -0.3
85,188 - GFF4984 0.67 -0.3
85,188 - GFF4984 0.67 +2.0
85,188 - GFF4984 0.67 -0.4
85,555 + +2.0
85,555 + -0.3
85,555 + +1.4
85,555 + -1.0
85,556 - -0.0
85,556 - +0.8
85,556 - +0.4
85,556 - -0.8
85,556 - -0.5
85,556 - -2.0
85,594 + +1.0
85,595 - -0.1
85,595 - +0.0
85,633 + -0.2
85,633 + -0.5
85,633 + -0.1
85,634 - -0.4
85,634 - -0.7
85,909 + GFF4985 0.32 -1.2
85,909 + GFF4985 0.32 -0.9
85,909 + GFF4985 0.32 -0.1
85,909 + GFF4985 0.32 +0.0
85,910 - GFF4985 0.32 -1.5
85,910 - GFF4985 0.32 +0.0
85,930 + GFF4985 0.34 +0.6
85,930 + GFF4985 0.34 -0.8
85,930 + GFF4985 0.34 -1.1
85,930 + GFF4985 0.34 +0.2
85,930 + GFF4985 0.34 +0.3
85,930 + GFF4985 0.34 -0.4
85,930 + GFF4985 0.34 +1.0
85,930 + GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 -0.6
85,931 - GFF4985 0.34 -1.1
85,931 - GFF4985 0.34 +0.9
85,931 - GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 -0.8
85,931 - GFF4985 0.34 -0.4
85,931 - GFF4985 0.34 -0.8
85,931 - GFF4985 0.34 -0.5
85,931 - GFF4985 0.34 +0.0
85,931 - GFF4985 0.34 -0.6
85,996 + GFF4985 0.41 +1.4
85,996 + GFF4985 0.41 +1.3
85,996 + GFF4985 0.41 +0.9
85,997 - GFF4985 0.41 -0.9
85,997 - GFF4985 0.41 -1.8
86,104 + GFF4985 0.52 -1.2
86,105 - GFF4985 0.52 -2.1
86,105 - GFF4985 0.52 -0.7
86,257 + GFF4985 0.67 -0.3
86,257 + GFF4985 0.67 -0.7
86,257 + GFF4985 0.67 -0.9
86,257 + GFF4985 0.67 -0.3
86,257 + GFF4985 0.67 -0.3
86,257 + GFF4985 0.67 +0.4
86,257 + GFF4985 0.67 +0.8
86,257 + GFF4985 0.67 -1.3
86,258 - GFF4985 0.67 -0.6
86,258 - GFF4985 0.67 +0.3
86,258 - GFF4985 0.67 +0.2
86,258 - GFF4985 0.67 -0.3
86,258 - GFF4985 0.67 -0.2
86,258 - GFF4985 0.67 -1.0
86,258 - GFF4985 0.67 -0.6
86,258 - GFF4985 0.67 -0.1
86,309 - GFF4985 0.73 +0.0
86,309 - GFF4985 0.73 +0.0
86,309 - GFF4985 0.73 +0.0
86,609 + -0.9
86,609 + +0.0
86,609 + -0.6
86,609 + -0.8
86,691 + +0.9
86,691 + -0.4
86,691 + +0.4
86,691 + -1.1
86,691 + +0.2
86,691 + -1.0
86,691 + +0.4
86,692 - -0.3
86,692 - +0.0
86,712 + -1.9
86,712 + +0.4
86,712 + +0.5
86,712 + +0.3
86,713 - +0.0
86,713 - -0.6
86,713 - +1.0
86,713 - +0.3
86,713 - +0.7
86,713 - -0.2
86,781 + GFF4986 0.12 -1.0
86,781 + GFF4986 0.12 -1.3
86,781 + GFF4986 0.12 +0.0
86,781 + GFF4986 0.12 -0.2
86,782 - GFF4986 0.12 -0.6
86,782 - GFF4986 0.12 -1.8
86,782 - GFF4986 0.12 -0.3
86,782 - GFF4986 0.12 -0.9
86,782 - GFF4986 0.12 -1.5
86,782 - GFF4986 0.12 -0.6
86,847 + GFF4986 0.17 -1.8
86,848 - GFF4986 0.18 -0.4
86,848 - GFF4986 0.18 +0.3
86,946 + GFF4986 0.26 -1.9
86,946 + GFF4986 0.26 -1.1
86,947 - GFF4986 0.26 +1.0
86,947 - GFF4986 0.26 -1.0
86,947 - GFF4986 0.26 +0.0
87,096 + GFF4986 0.38 +0.1
87,096 + GFF4986 0.38 -0.8
87,096 + GFF4986 0.38 +0.2
87,097 - GFF4986 0.38 -0.4
87,097 - GFF4986 0.38 +0.4
87,097 - GFF4986 0.38 +0.3
87,097 - GFF4986 0.38 +1.5
87,177 + GFF4986 0.44 +0.7
87,177 + GFF4986 0.44 +0.1
87,177 + GFF4986 0.44 -0.7
87,177 + GFF4986 0.44 -0.8
87,177 + GFF4986 0.44 +0.0
87,177 + GFF4986 0.44 -0.8
87,177 + GFF4986 0.44 -1.2
87,177 + GFF4986 0.44 -0.7
87,177 + GFF4986 0.44 +1.4
87,177 + GFF4986 0.44 +0.9
87,177 + GFF4986 0.44 +0.6
87,177 + GFF4986 0.44 -0.4
87,178 - GFF4986 0.45 -0.9
87,178 - GFF4986 0.45 -0.4
87,178 - GFF4986 0.45 +0.1
87,178 - GFF4986 0.45 +0.4
87,178 - GFF4986 0.45 -1.9
87,178 - GFF4986 0.45 -1.2
87,178 - GFF4986 0.45 +0.1
87,178 - GFF4986 0.45 -0.1
87,178 - GFF4986 0.45 -0.2
87,202 - GFF4986 0.46 -0.9
87,202 - GFF4986 0.46 +0.1
87,285 - GFF4986 0.53 -0.4
87,294 + GFF4986 0.54 -0.8
87,294 + GFF4986 0.54 +0.7
87,295 - GFF4986 0.54 +0.9
87,295 - GFF4986 0.54 -2.3
87,541 - GFF4986 0.74 -0.7
87,541 - GFF4986 0.74 +0.2
87,541 - GFF4986 0.74 -0.5

Or see this region's nucleotide sequence