Strain Fitness in Variovorax sp. SCN45 around GFF495

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF494 and GFF495 are separated by 130 nucleotidesGFF495 and GFF496 are separated by 153 nucleotides GFF494 - RND efflux system, membrane fusion protein, at 536,904 to 538,115 GFF494 GFF495 - Kup system potassium uptake protein, at 538,246 to 540,090 GFF495 GFF496 - Squalene synthase (EC 2.5.1.21), at 540,244 to 541,158 GFF496 Position (kb) 538 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.283 kb on + strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.284 kb on - strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.340 kb on + strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.341 kb on - strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.598 kb on + strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.599 kb on - strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.753 kb on + strand, within GFF494at 537.754 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494at 537.815 kb on - strand, within GFF494at 538.165 kb on + strandat 538.175 kb on + strandat 538.175 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.186 kb on + strandat 538.187 kb on - strandat 538.187 kb on - strandat 538.210 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.247 kb on + strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.248 kb on - strandat 538.295 kb on + strandat 538.295 kb on + strandat 538.295 kb on + strandat 538.296 kb on - strandat 538.296 kb on - strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.403 kb on + strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.404 kb on - strandat 538.442 kb on + strand, within GFF495at 538.443 kb on - strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.513 kb on + strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 538.514 kb on - strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.012 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.099 kb on + strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.100 kb on - strand, within GFF495at 539.153 kb on + strand, within GFF495at 539.154 kb on - strand, within GFF495at 539.336 kb on + strand, within GFF495at 539.336 kb on + strand, within GFF495at 539.336 kb on + strand, within GFF495at 539.337 kb on - strand, within GFF495at 539.337 kb on - strand, within GFF495at 539.337 kb on - strand, within GFF495at 539.337 kb on - strand, within GFF495at 539.337 kb on - strand, within GFF495at 539.417 kb on + strand, within GFF495at 539.417 kb on + strand, within GFF495at 539.417 kb on + strand, within GFF495at 539.417 kb on + strand, within GFF495at 539.417 kb on + strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.418 kb on - strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.656 kb on + strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.657 kb on - strand, within GFF495at 539.771 kb on + strand, within GFF495at 539.772 kb on - strand, within GFF495at 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.924 kb on + strandat 539.925 kb on - strandat 539.925 kb on - strandat 539.925 kb on - strandat 539.925 kb on - strandat 539.925 kb on - strandat 539.925 kb on - strandat 539.925 kb on - strandat 540.038 kb on + strandat 540.038 kb on + strandat 540.039 kb on - strandat 540.039 kb on - strandat 540.126 kb on - strandat 540.126 kb on - strandat 540.126 kb on - strandat 540.206 kb on + strandat 540.207 kb on - strandat 540.207 kb on - strandat 540.283 kb on + strandat 540.283 kb on + strandat 540.283 kb on + strandat 540.284 kb on - strandat 540.284 kb on - strandat 540.349 kb on + strand, within GFF496at 540.349 kb on + strand, within GFF496at 540.349 kb on + strand, within GFF496at 540.349 kb on + strand, within GFF496at 540.350 kb on - strand, within GFF496at 540.431 kb on - strand, within GFF496at 540.526 kb on + strand, within GFF496at 540.527 kb on - strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.607 kb on + strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.608 kb on - strand, within GFF496at 540.682 kb on + strand, within GFF496at 540.683 kb on - strand, within GFF496at 540.683 kb on - strand, within GFF496at 540.683 kb on - strand, within GFF496at 540.683 kb on - strand, within GFF496at 540.793 kb on + strand, within GFF496at 540.793 kb on + strand, within GFF496at 540.794 kb on - strand, within GFF496at 540.794 kb on - strand, within GFF496at 540.794 kb on - strand, within GFF496at 540.794 kb on - strand, within GFF496at 540.913 kb on + strand, within GFF496at 540.914 kb on - strand, within GFF496

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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537,283 + GFF494 0.31 +0.3
537,283 + GFF494 0.31 -0.3
537,283 + GFF494 0.31 -1.1
537,283 + GFF494 0.31 +0.1
537,283 + GFF494 0.31 -0.5
537,283 + GFF494 0.31 -0.4
537,284 - GFF494 0.31 +0.3
537,284 - GFF494 0.31 -1.3
537,284 - GFF494 0.31 -0.4
537,340 + GFF494 0.36 +0.1
537,340 + GFF494 0.36 -0.1
537,340 + GFF494 0.36 +0.9
537,340 + GFF494 0.36 +0.0
537,340 + GFF494 0.36 +1.9
537,340 + GFF494 0.36 +0.5
537,340 + GFF494 0.36 -0.5
537,340 + GFF494 0.36 -0.7
537,340 + GFF494 0.36 -0.7
537,341 - GFF494 0.36 -0.6
537,341 - GFF494 0.36 +0.2
537,341 - GFF494 0.36 -0.3
537,341 - GFF494 0.36 +0.0
537,341 - GFF494 0.36 +0.3
537,598 + GFF494 0.57 +0.9
537,598 + GFF494 0.57 -0.2
537,598 + GFF494 0.57 -0.9
537,598 + GFF494 0.57 -1.1
537,598 + GFF494 0.57 -0.0
537,598 + GFF494 0.57 +0.5
537,599 - GFF494 0.57 -0.4
537,599 - GFF494 0.57 +1.1
537,599 - GFF494 0.57 -1.6
537,599 - GFF494 0.57 +1.0
537,599 - GFF494 0.57 -0.1
537,599 - GFF494 0.57 +1.8
537,599 - GFF494 0.57 +0.4
537,599 - GFF494 0.57 -1.7
537,753 + GFF494 0.70 -0.0
537,753 + GFF494 0.70 -0.3
537,754 - GFF494 0.70 -0.8
537,815 - GFF494 0.75 -0.8
537,815 - GFF494 0.75 -1.1
538,165 + -0.6
538,175 + -1.4
538,175 + -0.1
538,186 + +1.4
538,186 + -0.7
538,186 + +0.4
538,186 + +1.0
538,186 + -0.2
538,187 - -0.3
538,187 - -2.3
538,210 + +0.1
538,247 + -0.5
538,247 + +1.4
538,247 + -1.9
538,247 + +0.1
538,247 + -2.4
538,248 - -0.9
538,248 - +0.4
538,248 - -0.4
538,248 - +1.0
538,248 - -1.2
538,295 + +0.8
538,295 + -0.4
538,295 + -0.4
538,296 - +1.0
538,296 - -0.8
538,403 + -0.7
538,403 + -0.9
538,403 + +0.5
538,403 + +0.6
538,403 + +0.3
538,403 + -0.4
538,403 + +0.0
538,404 - +0.0
538,404 - -0.7
538,404 - -0.4
538,404 - -0.6
538,442 + GFF495 0.11 +0.5
538,443 - GFF495 0.11 -2.0
538,513 + GFF495 0.14 -0.7
538,513 + GFF495 0.14 -2.1
538,513 + GFF495 0.14 -0.1
538,513 + GFF495 0.14 -1.0
538,514 - GFF495 0.15 +0.3
538,514 - GFF495 0.15 +0.3
538,514 - GFF495 0.15 +0.0
538,514 - GFF495 0.15 +0.2
538,514 - GFF495 0.15 +1.4
538,514 - GFF495 0.15 -0.9
538,514 - GFF495 0.15 +1.3
538,514 - GFF495 0.15 +0.2
539,012 + GFF495 0.42 +0.2
539,012 + GFF495 0.42 +0.7
539,012 + GFF495 0.42 -0.7
539,099 + GFF495 0.46 -0.3
539,099 + GFF495 0.46 +0.5
539,099 + GFF495 0.46 -0.3
539,099 + GFF495 0.46 -1.9
539,099 + GFF495 0.46 +1.4
539,100 - GFF495 0.46 -1.6
539,100 - GFF495 0.46 +1.4
539,100 - GFF495 0.46 -0.2
539,100 - GFF495 0.46 +0.2
539,100 - GFF495 0.46 -0.3
539,100 - GFF495 0.46 -0.5
539,100 - GFF495 0.46 -0.1
539,100 - GFF495 0.46 -0.7
539,153 + GFF495 0.49 +0.9
539,154 - GFF495 0.49 -0.7
539,336 + GFF495 0.59 -0.1
539,336 + GFF495 0.59 -0.2
539,336 + GFF495 0.59 +1.4
539,337 - GFF495 0.59 -0.1
539,337 - GFF495 0.59 +0.1
539,337 - GFF495 0.59 +0.5
539,337 - GFF495 0.59 +1.1
539,337 - GFF495 0.59 +0.4
539,417 + GFF495 0.63 +0.2
539,417 + GFF495 0.63 +0.6
539,417 + GFF495 0.63 -0.9
539,417 + GFF495 0.63 -0.9
539,417 + GFF495 0.63 +1.8
539,418 - GFF495 0.64 +1.6
539,418 - GFF495 0.64 -1.6
539,418 - GFF495 0.64 -1.0
539,418 - GFF495 0.64 -0.2
539,418 - GFF495 0.64 -0.3
539,418 - GFF495 0.64 +0.8
539,418 - GFF495 0.64 +0.1
539,418 - GFF495 0.64 -0.0
539,656 + GFF495 0.76 -1.1
539,656 + GFF495 0.76 -0.9
539,656 + GFF495 0.76 +0.9
539,656 + GFF495 0.76 +0.3
539,656 + GFF495 0.76 +1.4
539,656 + GFF495 0.76 -1.1
539,656 + GFF495 0.76 -0.1
539,656 + GFF495 0.76 +0.5
539,657 - GFF495 0.76 +0.1
539,657 - GFF495 0.76 -0.9
539,657 - GFF495 0.76 +1.2
539,657 - GFF495 0.76 -0.6
539,657 - GFF495 0.76 -0.1
539,657 - GFF495 0.76 -0.1
539,771 + GFF495 0.83 -1.6
539,772 - GFF495 0.83 -0.4
539,924 + -0.0
539,924 + -1.1
539,924 + -0.2
539,924 + -0.7
539,924 + +1.0
539,924 + -0.4
539,924 + -0.7
539,924 + +0.9
539,924 + -0.1
539,924 + +3.0
539,924 + +0.3
539,925 - -0.6
539,925 - +0.2
539,925 - +1.1
539,925 - -0.4
539,925 - -0.6
539,925 - -1.1
539,925 - -0.5
540,038 + +0.1
540,038 + -0.9
540,039 - -0.4
540,039 - +0.7
540,126 - +0.2
540,126 - +1.4
540,126 - +0.3
540,206 + -0.9
540,207 - -0.2
540,207 - +0.2
540,283 + -0.1
540,283 + +0.4
540,283 + -1.4
540,284 - +0.3
540,284 - -0.2
540,349 + GFF496 0.11 +0.9
540,349 + GFF496 0.11 -0.6
540,349 + GFF496 0.11 +1.3
540,349 + GFF496 0.11 +0.4
540,350 - GFF496 0.12 +0.0
540,431 - GFF496 0.20 +0.0
540,526 + GFF496 0.31 +0.4
540,527 - GFF496 0.31 +0.8
540,607 + GFF496 0.40 -1.6
540,607 + GFF496 0.40 -0.0
540,607 + GFF496 0.40 +0.2
540,607 + GFF496 0.40 -1.9
540,607 + GFF496 0.40 -1.4
540,607 + GFF496 0.40 -1.5
540,607 + GFF496 0.40 +0.4
540,608 - GFF496 0.40 +0.7
540,608 - GFF496 0.40 -1.5
540,608 - GFF496 0.40 -1.3
540,608 - GFF496 0.40 -0.8
540,608 - GFF496 0.40 -1.4
540,608 - GFF496 0.40 -0.1
540,608 - GFF496 0.40 +1.0
540,682 + GFF496 0.48 -1.9
540,683 - GFF496 0.48 -1.4
540,683 - GFF496 0.48 -0.8
540,683 - GFF496 0.48 +0.4
540,683 - GFF496 0.48 -1.4
540,793 + GFF496 0.60 -1.0
540,793 + GFF496 0.60 +0.6
540,794 - GFF496 0.60 +0.4
540,794 - GFF496 0.60 -0.7
540,794 - GFF496 0.60 +1.0
540,794 - GFF496 0.60 -0.7
540,913 + GFF496 0.73 +0.4
540,914 - GFF496 0.73 +1.7

Or see this region's nucleotide sequence