Strain Fitness in Variovorax sp. SCN45 around GFF4872

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4869 and GFF4870 overlap by 4 nucleotidesGFF4870 and GFF4871 overlap by 4 nucleotidesGFF4871 and GFF4872 overlap by 4 nucleotidesGFF4872 and GFF4873 overlap by 4 nucleotidesGFF4873 and GFF4874 are separated by 50 nucleotides GFF4869 - Type IV secretory pathway, protease TraF, at 241,963 to 242,550 GFF4869 GFF4870 - Glycosidases, at 242,547 to 243,080 GFF4870 GFF4871 - FIG00457034: hypothetical protein, at 243,077 to 243,340 GFF4871 GFF4872 - ParA-like protein, at 243,337 to 243,975 GFF4872 GFF4873 - no description, at 243,972 to 244,178 GFF4873 GFF4874 - Plasmid replication initiator protein, at 244,229 to 245,077 GFF4874 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.408 kb on + strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.409 kb on - strand, within GFF4869at 242.597 kb on - strandat 242.597 kb on - strandat 242.597 kb on - strandat 242.597 kb on - strandat 242.647 kb on + strand, within GFF4870at 242.842 kb on + strand, within GFF4870at 242.842 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.953 kb on + strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.954 kb on - strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.977 kb on + strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 242.978 kb on - strand, within GFF4870at 243.143 kb on + strand, within GFF4871at 243.144 kb on - strand, within GFF4871at 243.159 kb on - strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.213 kb on + strand, within GFF4871at 243.527 kb on - strand, within GFF4872at 243.527 kb on - strand, within GFF4872at 243.635 kb on + strand, within GFF4872at 243.635 kb on + strand, within GFF4872at 243.636 kb on - strand, within GFF4872at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.061 kb on + strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.062 kb on - strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.064 kb on + strand, within GFF4873at 244.065 kb on - strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.071 kb on + strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.072 kb on - strand, within GFF4873at 244.080 kb on + strand, within GFF4873at 244.081 kb on - strand, within GFF4873at 244.085 kb on + strand, within GFF4873at 244.094 kb on + strand, within GFF4873at 244.094 kb on + strand, within GFF4873at 244.150 kb on + strand, within GFF4873at 244.158 kb on + strandat 244.158 kb on + strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.159 kb on - strandat 244.173 kb on + strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.174 kb on - strandat 244.197 kb on + strandat 244.197 kb on + strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.198 kb on - strandat 244.231 kb on - strandat 244.314 kb on + strand, within GFF4874at 244.314 kb on + strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.315 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.369 kb on - strand, within GFF4874at 244.464 kb on + strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.465 kb on - strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.500 kb on + strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.501 kb on - strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.548 kb on + strand, within GFF4874at 244.738 kb on + strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.739 kb on - strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874at 244.767 kb on + strand, within GFF4874

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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242,408 + GFF4869 0.76 +0.2
242,408 + GFF4869 0.76 -0.0
242,408 + GFF4869 0.76 +0.4
242,408 + GFF4869 0.76 -2.1
242,409 - GFF4869 0.76 -0.4
242,409 - GFF4869 0.76 -0.9
242,409 - GFF4869 0.76 +0.4
242,409 - GFF4869 0.76 -0.6
242,409 - GFF4869 0.76 +0.6
242,409 - GFF4869 0.76 -1.3
242,409 - GFF4869 0.76 -0.7
242,409 - GFF4869 0.76 +1.5
242,409 - GFF4869 0.76 +2.1
242,597 - -1.2
242,597 - -1.2
242,597 - +1.3
242,597 - -0.4
242,647 + GFF4870 0.19 -0.8
242,842 + GFF4870 0.55 -2.5
242,842 + GFF4870 0.55 -0.2
242,953 + GFF4870 0.76 +0.0
242,953 + GFF4870 0.76 +0.6
242,953 + GFF4870 0.76 -0.5
242,953 + GFF4870 0.76 +0.4
242,953 + GFF4870 0.76 -1.2
242,954 - GFF4870 0.76 +0.6
242,954 - GFF4870 0.76 +0.4
242,954 - GFF4870 0.76 -0.0
242,977 + GFF4870 0.81 -1.1
242,977 + GFF4870 0.81 -0.6
242,977 + GFF4870 0.81 +1.1
242,977 + GFF4870 0.81 +0.2
242,977 + GFF4870 0.81 +0.1
242,977 + GFF4870 0.81 -0.0
242,977 + GFF4870 0.81 +0.1
242,977 + GFF4870 0.81 +2.1
242,977 + GFF4870 0.81 -0.8
242,977 + GFF4870 0.81 +0.6
242,977 + GFF4870 0.81 -0.4
242,977 + GFF4870 0.81 -0.8
242,977 + GFF4870 0.81 +0.9
242,977 + GFF4870 0.81 +0.8
242,977 + GFF4870 0.81 +0.8
242,977 + GFF4870 0.81 -1.0
242,977 + GFF4870 0.81 -1.4
242,977 + GFF4870 0.81 -0.2
242,977 + GFF4870 0.81 -1.0
242,978 - GFF4870 0.81 +0.1
242,978 - GFF4870 0.81 -0.2
242,978 - GFF4870 0.81 +1.2
242,978 - GFF4870 0.81 +0.7
242,978 - GFF4870 0.81 +0.8
242,978 - GFF4870 0.81 -0.7
242,978 - GFF4870 0.81 -1.0
242,978 - GFF4870 0.81 -0.8
242,978 - GFF4870 0.81 +0.8
242,978 - GFF4870 0.81 -0.8
242,978 - GFF4870 0.81 +0.1
242,978 - GFF4870 0.81 +0.1
243,143 + GFF4871 0.25 +0.9
243,144 - GFF4871 0.25 +0.7
243,159 - GFF4871 0.31 -1.2
243,213 + GFF4871 0.52 -0.3
243,213 + GFF4871 0.52 -0.3
243,213 + GFF4871 0.52 -0.1
243,213 + GFF4871 0.52 +0.3
243,213 + GFF4871 0.52 +0.1
243,527 - GFF4872 0.30 -0.2
243,527 - GFF4872 0.30 +0.2
243,635 + GFF4872 0.47 +0.8
243,635 + GFF4872 0.47 -0.0
243,636 - GFF4872 0.47 -2.3
244,061 + GFF4873 0.43 +0.6
244,061 + GFF4873 0.43 -1.4
244,061 + GFF4873 0.43 -0.5
244,061 + GFF4873 0.43 -1.3
244,061 + GFF4873 0.43 -0.1
244,061 + GFF4873 0.43 -0.3
244,061 + GFF4873 0.43 +0.1
244,061 + GFF4873 0.43 -1.4
244,061 + GFF4873 0.43 -0.2
244,061 + GFF4873 0.43 -1.3
244,061 + GFF4873 0.43 -0.4
244,061 + GFF4873 0.43 -0.3
244,062 - GFF4873 0.43 +1.0
244,062 - GFF4873 0.43 -0.1
244,062 - GFF4873 0.43 -0.4
244,062 - GFF4873 0.43 -0.4
244,062 - GFF4873 0.43 +1.8
244,062 - GFF4873 0.43 -0.4
244,064 + GFF4873 0.44 +0.1
244,064 + GFF4873 0.44 -0.2
244,064 + GFF4873 0.44 +0.2
244,065 - GFF4873 0.45 -0.1
244,071 + GFF4873 0.48 -0.1
244,071 + GFF4873 0.48 -0.8
244,071 + GFF4873 0.48 -1.5
244,072 - GFF4873 0.48 -0.0
244,072 - GFF4873 0.48 -0.0
244,072 - GFF4873 0.48 +1.1
244,072 - GFF4873 0.48 -0.5
244,080 + GFF4873 0.52 +0.1
244,081 - GFF4873 0.53 +0.3
244,085 + GFF4873 0.55 +0.1
244,094 + GFF4873 0.59 -0.0
244,094 + GFF4873 0.59 -0.2
244,150 + GFF4873 0.86 -0.4
244,158 + -0.7
244,158 + -0.8
244,159 - +0.6
244,159 - -0.9
244,159 - -0.8
244,173 + -0.0
244,174 - -0.5
244,174 - +0.4
244,174 - -0.0
244,174 - -1.2
244,197 + -0.7
244,197 + -0.2
244,198 - -1.0
244,198 - +0.4
244,198 - +1.0
244,231 - +0.8
244,314 + GFF4874 0.10 -0.2
244,314 + GFF4874 0.10 -1.9
244,315 - GFF4874 0.10 -0.2
244,315 - GFF4874 0.10 -0.8
244,315 - GFF4874 0.10 -1.0
244,315 - GFF4874 0.10 -0.7
244,369 - GFF4874 0.16 -0.1
244,369 - GFF4874 0.16 -0.0
244,369 - GFF4874 0.16 -0.0
244,464 + GFF4874 0.28 +1.2
244,465 - GFF4874 0.28 -0.6
244,465 - GFF4874 0.28 -0.1
244,465 - GFF4874 0.28 -0.0
244,465 - GFF4874 0.28 -0.8
244,500 + GFF4874 0.32 -1.0
244,500 + GFF4874 0.32 -1.4
244,501 - GFF4874 0.32 -0.3
244,501 - GFF4874 0.32 +0.1
244,501 - GFF4874 0.32 +1.3
244,501 - GFF4874 0.32 -1.0
244,548 + GFF4874 0.38 +2.1
244,548 + GFF4874 0.38 -0.2
244,548 + GFF4874 0.38 +2.1
244,548 + GFF4874 0.38 -0.8
244,548 + GFF4874 0.38 +0.3
244,738 + GFF4874 0.60 -0.1
244,739 - GFF4874 0.60 -0.6
244,739 - GFF4874 0.60 -1.6
244,767 + GFF4874 0.63 -1.5
244,767 + GFF4874 0.63 -0.3
244,767 + GFF4874 0.63 -1.0

Or see this region's nucleotide sequence