Strain Fitness in Variovorax sp. SCN45 around GFF4551

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4550 and GFF4551 overlap by 1 nucleotidesGFF4551 and GFF4552 are separated by 8 nucleotidesGFF4552 and GFF4553 are separated by 51 nucleotides GFF4550 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 187,099 to 188,784 GFF4550 GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353 GFF4551 GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991 GFF4552 GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032 GFF4553 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.848 kb on + strand, within GFF4550at 188.104 kb on + strand, within GFF4550at 188.104 kb on + strand, within GFF4550at 188.104 kb on + strand, within GFF4550at 188.104 kb on + strand, within GFF4550at 188.104 kb on + strand, within GFF4550at 188.105 kb on - strand, within GFF4550at 188.105 kb on - strand, within GFF4550at 188.105 kb on - strand, within GFF4550at 188.105 kb on - strand, within GFF4550at 188.143 kb on + strand, within GFF4550at 188.143 kb on + strand, within GFF4550at 188.143 kb on + strand, within GFF4550at 188.143 kb on + strand, within GFF4550at 188.143 kb on + strand, within GFF4550at 188.144 kb on - strand, within GFF4550at 188.144 kb on - strand, within GFF4550at 188.144 kb on - strand, within GFF4550at 188.144 kb on - strand, within GFF4550at 188.144 kb on - strand, within GFF4550at 188.227 kb on + strand, within GFF4550at 188.227 kb on + strand, within GFF4550at 188.228 kb on - strand, within GFF4550at 188.288 kb on - strand, within GFF4550at 188.365 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.443 kb on + strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.444 kb on - strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.491 kb on + strand, within GFF4550at 188.492 kb on - strand, within GFF4550at 188.677 kb on + strandat 188.678 kb on - strandat 188.928 kb on + strand, within GFF4551at 188.928 kb on + strand, within GFF4551at 188.928 kb on + strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.929 kb on - strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.940 kb on + strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 188.941 kb on - strand, within GFF4551at 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.509 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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187,848 + GFF4550 0.44 -0.1
188,104 + GFF4550 0.60 -1.1
188,104 + GFF4550 0.60 -1.1
188,104 + GFF4550 0.60 -1.3
188,104 + GFF4550 0.60 +0.1
188,104 + GFF4550 0.60 +0.4
188,105 - GFF4550 0.60 +1.2
188,105 - GFF4550 0.60 +0.3
188,105 - GFF4550 0.60 +0.0
188,105 - GFF4550 0.60 -0.2
188,143 + GFF4550 0.62 -0.0
188,143 + GFF4550 0.62 +0.6
188,143 + GFF4550 0.62 -0.4
188,143 + GFF4550 0.62 -0.1
188,143 + GFF4550 0.62 +0.3
188,144 - GFF4550 0.62 +0.7
188,144 - GFF4550 0.62 -1.0
188,144 - GFF4550 0.62 -0.9
188,144 - GFF4550 0.62 +0.1
188,144 - GFF4550 0.62 +0.6
188,227 + GFF4550 0.67 -0.5
188,227 + GFF4550 0.67 +0.4
188,228 - GFF4550 0.67 +0.3
188,288 - GFF4550 0.71 -0.4
188,365 + GFF4550 0.75 +1.9
188,443 + GFF4550 0.80 -0.3
188,443 + GFF4550 0.80 -1.3
188,443 + GFF4550 0.80 -0.6
188,443 + GFF4550 0.80 -0.8
188,443 + GFF4550 0.80 -0.5
188,444 - GFF4550 0.80 +0.6
188,444 - GFF4550 0.80 +0.7
188,444 - GFF4550 0.80 -2.1
188,444 - GFF4550 0.80 -0.5
188,491 + GFF4550 0.83 -0.4
188,491 + GFF4550 0.83 -0.8
188,491 + GFF4550 0.83 +0.4
188,492 - GFF4550 0.83 -0.4
188,677 + -0.6
188,678 - +0.0
188,928 + GFF4551 0.25 +1.7
188,928 + GFF4551 0.25 +1.0
188,928 + GFF4551 0.25 +0.2
188,929 - GFF4551 0.25 -0.9
188,929 - GFF4551 0.25 -0.1
188,929 - GFF4551 0.25 +0.3
188,929 - GFF4551 0.25 +0.4
188,929 - GFF4551 0.25 +1.5
188,929 - GFF4551 0.25 +1.0
188,940 + GFF4551 0.27 -0.6
188,940 + GFF4551 0.27 +0.3
188,940 + GFF4551 0.27 -0.1
188,940 + GFF4551 0.27 +0.7
188,940 + GFF4551 0.27 +0.2
188,940 + GFF4551 0.27 -0.5
188,941 - GFF4551 0.28 -0.1
188,941 - GFF4551 0.28 +0.5
188,941 - GFF4551 0.28 -0.4
189,392 + -0.5
189,392 + +0.1
189,392 + -0.5
189,392 + -1.1
189,392 + -0.6
189,392 + +1.2
189,392 + -0.9
189,393 - -0.7
189,393 - +0.2
189,393 - +0.3
189,393 - +0.3
189,393 - +0.8
189,393 - -1.8
189,509 + GFF4552 0.23 +0.1
189,533 + GFF4552 0.27 -0.5
189,533 + GFF4552 0.27 -1.2
189,534 - GFF4552 0.27 -1.4
189,534 - GFF4552 0.27 -1.0
189,534 - GFF4552 0.27 -0.7
189,534 - GFF4552 0.27 -0.2
189,534 - GFF4552 0.27 +0.2
189,534 - GFF4552 0.27 -1.3
189,534 - GFF4552 0.27 -0.4
189,534 - GFF4552 0.27 +1.5
189,534 - GFF4552 0.27 -0.3
189,890 + GFF4552 0.84 -0.4
189,890 + GFF4552 0.84 +0.3
189,890 + GFF4552 0.84 -1.5
189,890 + GFF4552 0.84 +1.6
189,890 + GFF4552 0.84 -2.0
189,890 + GFF4552 0.84 +0.5
189,890 + GFF4552 0.84 +0.7
189,890 + GFF4552 0.84 +0.2
189,890 + GFF4552 0.84 -1.0
189,890 + GFF4552 0.84 -0.0
189,890 + GFF4552 0.84 -0.8
189,891 - GFF4552 0.84 +1.1
189,891 - GFF4552 0.84 -0.8
189,891 - GFF4552 0.84 -0.9
189,891 - GFF4552 0.84 -0.8
189,891 - GFF4552 0.84 -1.5
189,941 + -0.4
189,941 + -0.2
189,941 + +0.2
189,941 + -0.5
189,941 + -0.2
189,942 - -0.7
189,942 - -0.2
189,942 - -0.4
189,942 - -0.9

Or see this region's nucleotide sequence