Strain Fitness in Variovorax sp. SCN45 around GFF4248

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4246 and GFF4247 are separated by 41 nucleotidesGFF4247 and GFF4248 are separated by 4 nucleotidesGFF4248 and GFF4249 are separated by 102 nucleotides GFF4246 - FIG00464377: hypothetical protein, at 161,725 to 162,369 GFF4246 GFF4247 - no description, at 162,411 to 163,082 GFF4247 GFF4248 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 163,087 to 163,992 GFF4248 GFF4249 - hypothetical protein, at 164,095 to 165,507 GFF4249 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 162.212 kb on - strand, within GFF4246at 162.798 kb on + strand, within GFF4247at 162.798 kb on + strand, within GFF4247at 162.798 kb on + strand, within GFF4247at 162.799 kb on - strand, within GFF4247at 162.918 kb on + strand, within GFF4247at 162.919 kb on - strand, within GFF4247at 162.919 kb on - strand, within GFF4247at 162.919 kb on - strand, within GFF4247at 162.919 kb on - strand, within GFF4247at 162.919 kb on - strand, within GFF4247at 162.924 kb on + strand, within GFF4247at 162.925 kb on - strand, within GFF4247at 162.925 kb on - strand, within GFF4247at 162.925 kb on - strand, within GFF4247at 163.100 kb on + strandat 163.101 kb on - strandat 163.231 kb on + strand, within GFF4248at 163.231 kb on + strand, within GFF4248at 163.231 kb on + strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.232 kb on - strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.636 kb on + strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.637 kb on - strand, within GFF4248at 163.639 kb on + strand, within GFF4248at 163.675 kb on + strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.676 kb on - strand, within GFF4248at 163.750 kb on + strand, within GFF4248at 163.750 kb on + strand, within GFF4248at 163.834 kb on + strand, within GFF4248at 163.834 kb on + strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 163.835 kb on - strand, within GFF4248at 164.022 kb on + strandat 164.022 kb on + strandat 164.061 kb on - strandat 164.061 kb on - strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.092 kb on + strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.093 kb on - strandat 164.112 kb on + strandat 164.112 kb on + strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.113 kb on - strandat 164.393 kb on - strand, within GFF4249at 164.417 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.489 kb on + strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.490 kb on - strand, within GFF4249at 164.560 kb on + strand, within GFF4249at 164.560 kb on + strand, within GFF4249at 164.561 kb on - strand, within GFF4249at 164.561 kb on - strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.668 kb on + strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.669 kb on - strand, within GFF4249at 164.813 kb on - strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.851 kb on + strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.852 kb on - strand, within GFF4249at 164.954 kb on - strand, within GFF4249at 164.976 kb on + strand, within GFF4249

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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162,212 - GFF4246 0.76 +0.2
162,798 + GFF4247 0.58 -1.4
162,798 + GFF4247 0.58 -0.1
162,798 + GFF4247 0.58 -0.4
162,799 - GFF4247 0.58 -0.6
162,918 + GFF4247 0.75 -1.0
162,919 - GFF4247 0.76 -0.8
162,919 - GFF4247 0.76 -1.1
162,919 - GFF4247 0.76 -0.6
162,919 - GFF4247 0.76 +0.6
162,919 - GFF4247 0.76 -0.5
162,924 + GFF4247 0.76 +0.4
162,925 - GFF4247 0.76 +0.5
162,925 - GFF4247 0.76 -0.2
162,925 - GFF4247 0.76 -1.0
163,100 + -1.0
163,101 - -0.1
163,231 + GFF4248 0.16 -0.6
163,231 + GFF4248 0.16 -0.8
163,231 + GFF4248 0.16 -0.2
163,232 - GFF4248 0.16 -0.6
163,232 - GFF4248 0.16 -2.3
163,232 - GFF4248 0.16 +0.0
163,232 - GFF4248 0.16 +0.3
163,232 - GFF4248 0.16 -0.6
163,636 + GFF4248 0.61 -0.6
163,636 + GFF4248 0.61 -1.0
163,636 + GFF4248 0.61 -2.2
163,636 + GFF4248 0.61 -0.2
163,637 - GFF4248 0.61 +0.1
163,637 - GFF4248 0.61 -2.0
163,637 - GFF4248 0.61 -1.6
163,637 - GFF4248 0.61 +1.8
163,637 - GFF4248 0.61 -0.5
163,637 - GFF4248 0.61 +0.4
163,637 - GFF4248 0.61 +0.5
163,637 - GFF4248 0.61 -1.3
163,639 + GFF4248 0.61 +0.8
163,675 + GFF4248 0.65 +0.8
163,676 - GFF4248 0.65 +1.2
163,676 - GFF4248 0.65 +0.3
163,676 - GFF4248 0.65 -2.0
163,750 + GFF4248 0.73 -0.7
163,750 + GFF4248 0.73 -0.8
163,834 + GFF4248 0.82 -0.2
163,834 + GFF4248 0.82 -0.2
163,835 - GFF4248 0.83 -0.9
163,835 - GFF4248 0.83 -0.5
163,835 - GFF4248 0.83 -2.0
164,022 + -0.7
164,022 + +0.7
164,061 - -1.1
164,061 - +0.6
164,092 + -1.1
164,092 + -0.3
164,092 + -0.3
164,092 + -0.7
164,092 + -0.8
164,092 + -0.3
164,092 + +0.4
164,092 + -2.0
164,092 + -1.4
164,092 + +0.1
164,092 + -0.9
164,092 + -0.6
164,092 + -0.4
164,092 + -1.4
164,092 + -0.6
164,093 - +0.2
164,093 - +0.4
164,093 - -0.8
164,093 - +0.8
164,093 - -0.7
164,093 - -0.2
164,093 - -1.4
164,093 - -0.8
164,093 - -0.6
164,093 - -0.5
164,093 - -0.4
164,093 - -0.0
164,093 - +0.2
164,093 - -0.4
164,093 - -0.4
164,112 + -0.4
164,112 + -0.0
164,113 - -0.6
164,113 - -0.1
164,113 - -0.8
164,113 - -0.2
164,113 - -0.1
164,393 - GFF4249 0.21 -0.6
164,417 + GFF4249 0.23 -0.2
164,489 + GFF4249 0.28 -0.2
164,489 + GFF4249 0.28 -0.2
164,489 + GFF4249 0.28 -0.2
164,490 - GFF4249 0.28 +0.1
164,490 - GFF4249 0.28 -0.4
164,490 - GFF4249 0.28 -0.2
164,560 + GFF4249 0.33 -0.8
164,560 + GFF4249 0.33 -0.0
164,561 - GFF4249 0.33 -0.3
164,561 - GFF4249 0.33 +1.5
164,668 + GFF4249 0.41 -0.3
164,668 + GFF4249 0.41 +0.0
164,668 + GFF4249 0.41 -0.2
164,668 + GFF4249 0.41 -1.4
164,669 - GFF4249 0.41 -0.5
164,669 - GFF4249 0.41 -0.3
164,669 - GFF4249 0.41 -0.1
164,813 - GFF4249 0.51 -0.0
164,851 + GFF4249 0.54 +0.0
164,851 + GFF4249 0.54 -0.2
164,851 + GFF4249 0.54 +1.5
164,851 + GFF4249 0.54 +2.6
164,852 - GFF4249 0.54 -1.4
164,852 - GFF4249 0.54 -1.2
164,852 - GFF4249 0.54 -0.8
164,852 - GFF4249 0.54 -1.9
164,954 - GFF4249 0.61 -0.5
164,976 + GFF4249 0.62 -0.4

Or see this region's nucleotide sequence