Strain Fitness in Variovorax sp. SCN45 around GFF4201

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
115,833	+		GFF4200	0.43	+0.1
115,833	+		GFF4200	0.43	+0.6
115,833	+		GFF4200	0.43	-0.8
115,833	+		GFF4200	0.43	+0.3
115,833	+		GFF4200	0.43	-2.1
115,834	-		GFF4200	0.43	-0.4
115,834	-		GFF4200	0.43	-1.0
115,834	-		GFF4200	0.43	+0.4
115,834	-		GFF4200	0.43	+0.2
115,834	-		GFF4200	0.43	+0.7
115,847	+		GFF4200	0.44	-1.6
115,847	+		GFF4200	0.44	+0.4
116,412	+				-0.5
116,412	+				-1.6
116,412	+				+0.4
116,412	+				-0.9
116,413	-				-0.3
116,413	-				+1.1
116,413	-				-0.4
116,413	-				-0.9
116,413	-				-0.9
116,413	-				+0.5
116,415	-				-0.5
116,946	+		GFF4201	0.40	-1.1
116,947	-		GFF4201	0.40	+0.8
117,291	+		GFF4201	0.71	-2.8
117,291	+		GFF4201	0.71	-1.2
117,291	+		GFF4201	0.71	-0.5
117,291	+		GFF4201	0.71	-0.5
117,291	+		GFF4201	0.71	+0.4
117,292	-		GFF4201	0.71	-0.3
118,109	+		GFF4202	0.65	-2.6
118,109	+		GFF4202	0.65	+0.0
118,110	-		GFF4202	0.65	+0.9
118,358	+				-0.4
118,358	+				+0.1
118,358	+				+0.0
118,497	+				-0.4
118,498	-				-2.2
118,498	-				+0.0
118,498	-				-0.2
118,503	+				-0.2