Strain Fitness in Variovorax sp. SCN45 around GFF4147

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
52,691	-				-0.4
52,691	-				+0.0
52,692	+				-1.4
52,692	+				-1.5
53,008	-		GFF4146	0.29	-1.8
53,008	-		GFF4146	0.29	-0.5
53,253	+		GFF4146	0.55	-0.3
53,724	-		GFF4147	0.23	-1.1
53,801	+		GFF4147	0.50	-1.4
53,801	+		GFF4147	0.50	+1.3
53,802	-		GFF4147	0.50	+0.0
53,808	-		GFF4147	0.52	-0.1
53,808	-		GFF4147	0.52	-1.6
53,883	-		GFF4147	0.78	+0.1
53,919	-				+0.2
53,982	+				+0.2
53,982	+				+1.4
53,983	-				-0.3
53,985	-				+1.1
54,002	+				-0.4
54,003	-				-0.4
54,024	+				+0.7
54,024	+				+1.2
54,025	-				+0.2
54,146	+				-0.3
54,146	+				-1.1
54,146	+				-2.6
54,147	-				-0.9
54,570	-		GFF4148	0.47	+2.8
54,601	-		GFF4148	0.50	-1.6
54,834	-		GFF4148	0.74	-0.5
54,834	-		GFF4148	0.74	-0.4
54,900	-		GFF4148	0.80	-1.6
54,942	-		GFF4148	0.84	+0.0
54,942	-		GFF4148	0.84	+0.5
54,942	-		GFF4148	0.84	+0.2