Strain Fitness in Variovorax sp. SCN45 around GFF3990

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
192,393	+		GFF3988	0.22	-1.1
192,445	-		GFF3988	0.32	+0.1
192,466	+		GFF3988	0.36	-0.8
192,467	-		GFF3988	0.36	+0.2
192,467	-		GFF3988	0.36	-0.8
192,487	+		GFF3988	0.40	-0.4
192,523	+		GFF3988	0.47	-0.0
192,523	+		GFF3988	0.47	-0.2
192,524	-		GFF3988	0.47	-1.0
192,524	-		GFF3988	0.47	-1.0
192,524	-		GFF3988	0.47	+0.1
192,741	+		GFF3988	0.88	-0.2
192,883	-		GFF3989	0.17	-0.8
192,892	-		GFF3989	0.20	+0.5
192,892	-		GFF3989	0.20	+0.9
192,951	+		GFF3989	0.33	+0.0
192,951	+		GFF3989	0.33	+0.0
192,952	-		GFF3989	0.33	+0.3
193,274	+				+0.4
193,515	+		GFF3990	0.67	+0.2
193,515	+		GFF3990	0.67	-0.7
193,516	-		GFF3990	0.68	-0.0
193,516	-		GFF3990	0.68	+1.3
193,516	-		GFF3990	0.68	+0.3
193,516	-		GFF3990	0.68	-0.7
193,634	+				-0.3
193,635	-				-0.1
193,759	-				-1.7
193,759	-				+0.1
193,923	+				+0.3
193,923	+				+0.2
193,923	+				+0.2
193,924	-				+0.4
193,924	-				-1.2
193,978	+				-0.7
193,998	+				-0.5
194,006	+				-0.2
194,006	+				-0.8
194,006	+				+0.1
194,006	+				-1.3
194,006	+				-1.0
194,006	+				-0.6
194,007	-				-1.4
194,141	+				-0.2
194,142	-				-0.4
194,195	-				-0.0
194,195	-				+0.4
194,260	+				+1.1
194,261	-				-0.2
194,376	+				-0.6
194,394	+				-0.4
194,394	+				+0.9
194,395	-				-0.2
194,395	-				-0.2
194,420	+				-0.2