Strain Fitness in Variovorax sp. SCN45 around GFF3496

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
241	+				+0.7
242	-				-0.1
308	-		GFF3495	0.10	-0.3
830	-		GFF3495	0.73	-0.3
830	-		GFF3495	0.73	+0.2
1,179	+				-0.5
1,204	-				+0.6
1,405	-		GFF3496	0.18	+0.1
1,460	+		GFF3496	0.21	+0.6
1,551	+		GFF3496	0.26	+0.3
1,551	+		GFF3496	0.26	+0.5
1,551	+		GFF3496	0.26	+0.5
1,551	+		GFF3496	0.26	-0.2
1,552	-		GFF3496	0.26	+0.5
1,552	-		GFF3496	0.26	+1.5
1,552	-		GFF3496	0.26	+0.4
1,662	+		GFF3496	0.32	-0.3
1,707	+		GFF3496	0.34	-0.0
1,707	+		GFF3496	0.34	-0.3
1,708	-		GFF3496	0.34	-1.3
1,708	-		GFF3496	0.34	+0.9
1,708	-		GFF3496	0.34	-1.1
1,836	+		GFF3496	0.41	+1.5
1,837	-		GFF3496	0.41	+3.4
1,837	-		GFF3496	0.41	+0.2
1,861	-		GFF3496	0.42	+0.5
1,861	-		GFF3496	0.42	-0.2
1,893	+		GFF3496	0.44	+0.5
1,935	+		GFF3496	0.46	-1.2
1,936	-		GFF3496	0.46	+0.7
1,984	-		GFF3496	0.48	-0.9
2,007	+		GFF3496	0.50	-0.7
2,091	+		GFF3496	0.54	+0.6
2,091	+		GFF3496	0.54	-0.2
2,178	+		GFF3496	0.59	-0.2
2,178	+		GFF3496	0.59	-0.9
2,179	-		GFF3496	0.59	-0.6
2,179	-		GFF3496	0.59	+0.9
2,181	+		GFF3496	0.59	-0.2
2,310	+		GFF3496	0.65	-0.3
2,311	-		GFF3496	0.65	+0.0
2,311	-		GFF3496	0.65	-1.1
2,430	+		GFF3496	0.72	-1.0
2,431	-		GFF3496	0.72	-2.0
2,481	+		GFF3496	0.74	-0.2
2,481	+		GFF3496	0.74	+1.1
2,481	+		GFF3496	0.74	-0.8
2,481	+		GFF3496	0.74	+0.3
2,481	+		GFF3496	0.74	-0.0
2,482	-		GFF3496	0.74	+0.7
2,482	-		GFF3496	0.74	+0.0
2,482	-		GFF3496	0.74	-1.3
2,485	-		GFF3496	0.75	+0.0
2,535	+		GFF3496	0.77	+0.8
2,535	+		GFF3496	0.77	+0.9
2,536	-		GFF3496	0.77	+0.5
2,536	-		GFF3496	0.77	-0.4
2,560	-		GFF3496	0.78	-2.2
2,560	-		GFF3496	0.78	-0.6
2,586	+		GFF3496	0.80	+1.8
2,586	+		GFF3496	0.80	+1.1
2,587	-		GFF3496	0.80	+0.7
2,736	+		GFF3496	0.88	+2.8
2,736	+		GFF3496	0.88	-0.5
2,787	+				-0.2
2,787	+				+1.5
2,787	+				-0.1
2,787	+				+0.5
2,788	-				-0.3
2,788	-				+0.7
2,788	-				+0.6
2,788	-				-0.1
2,788	-				+0.6
2,788	-				+0.1
2,788	-				-0.2
3,021	+				-0.5
3,021	+				+0.0
3,021	+				+0.5
3,021	+				-1.1
3,021	+				-0.1
3,022	-				+0.1
3,022	-				+0.9
3,022	-				-0.1
3,072	+				-0.2
3,073	+				-0.4
3,073	+				-0.5
3,073	+				+0.5
3,073	+				-0.9
3,073	+				+1.1
3,073	+				+1.8
3,074	-				+1.1
3,074	-				-0.5
3,074	-				-0.1
3,074	-				+0.5
3,296	+		GFF3497	0.26	-0.5
3,296	+		GFF3497	0.26	-0.9
3,296	+		GFF3497	0.26	+0.1
3,296	+		GFF3497	0.26	+0.1
3,297	-		GFF3497	0.26	-1.0
3,297	-		GFF3497	0.26	+0.1
3,297	-		GFF3497	0.26	-0.4
3,297	-		GFF3497	0.26	-1.5
3,297	-		GFF3497	0.26	-0.5
3,297	-		GFF3497	0.26	+0.3
3,365	+		GFF3497	0.35	+1.5
3,365	+		GFF3497	0.35	-1.8
3,365	+		GFF3497	0.35	+0.1
3,365	+		GFF3497	0.35	-2.1
3,366	-		GFF3497	0.35	+0.4
3,366	-		GFF3497	0.35	-0.5
3,366	-		GFF3497	0.35	+0.0
3,431	+		GFF3497	0.43	+0.1
3,432	-		GFF3497	0.44	-0.9
3,432	-		GFF3497	0.44	-0.4
3,647	+		GFF3497	0.71	-0.4
3,647	+		GFF3497	0.71	-0.8
3,647	+		GFF3497	0.71	-0.1
3,695	+		GFF3497	0.77	-0.9
3,695	+		GFF3497	0.77	-0.1
3,696	-		GFF3497	0.77	-0.3
3,696	-		GFF3497	0.77	-0.1
3,773	+		GFF3497	0.87	-0.6
3,773	+		GFF3497	0.87	-1.2
3,774	-		GFF3497	0.87	-0.0
3,833	+				+0.0