Strain Fitness in Variovorax sp. SCN45 around GFF2866

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2865 and GFF2866 are separated by 112 nucleotidesGFF2866 and GFF2867 overlap by 4 nucleotides GFF2865 - Uncharacterized MFS-type transporter, at 287,982 to 289,511 GFF2865 GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787 GFF2866 GFF2867 - DNA recombination protein RmuC, at 290,784 to 292,151 GFF2867 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 288.655 kb on + strand, within GFF2865at 288.655 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.882 kb on - strand, within GFF2865at 288.882 kb on - strand, within GFF2865at 288.882 kb on - strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.279 kb on + strand, within GFF2865at 289.280 kb on - strand, within GFF2865at 289.280 kb on - strand, within GFF2865at 289.280 kb on - strand, within GFF2865at 289.280 kb on - strand, within GFF2865at 289.280 kb on - strand, within GFF2865at 289.333 kb on + strand, within GFF2865at 289.333 kb on + strand, within GFF2865at 289.333 kb on + strand, within GFF2865at 289.333 kb on + strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.334 kb on - strand, within GFF2865at 289.447 kb on + strandat 289.447 kb on + strandat 289.447 kb on + strandat 289.447 kb on + strandat 289.448 kb on - strandat 289.448 kb on - strandat 289.448 kb on - strandat 289.499 kb on + strandat 289.499 kb on + strandat 289.499 kb on + strandat 289.499 kb on + strandat 289.500 kb on - strandat 289.500 kb on - strandat 289.500 kb on - strandat 289.500 kb on - strandat 289.546 kb on - strandat 289.546 kb on - strandat 289.563 kb on + strandat 289.564 kb on - strandat 289.564 kb on - strandat 289.564 kb on - strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.644 kb on + strandat 289.645 kb on - strandat 289.645 kb on - strandat 289.645 kb on - strandat 289.645 kb on - strandat 289.645 kb on - strandat 289.910 kb on + strand, within GFF2866at 289.910 kb on + strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 290.681 kb on + strandat 290.681 kb on + strandat 290.681 kb on + strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.965 kb on + strand, within GFF2867at 290.966 kb on - strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.457 kb on + strand, within GFF2867at 291.457 kb on + strand, within GFF2867

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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288,655 + GFF2865 0.44 +1.8
288,655 + GFF2865 0.44 +0.4
288,853 + GFF2865 0.57 -2.3
288,853 + GFF2865 0.57 -2.1
288,853 + GFF2865 0.57 -1.3
288,853 + GFF2865 0.57 +0.1
288,853 + GFF2865 0.57 -0.8
288,853 + GFF2865 0.57 +1.2
288,853 + GFF2865 0.57 -0.7
288,853 + GFF2865 0.57 -0.7
288,854 - GFF2865 0.57 -0.3
288,854 - GFF2865 0.57 -0.6
288,854 - GFF2865 0.57 +1.0
288,854 - GFF2865 0.57 -0.4
288,881 + GFF2865 0.59 +0.8
288,881 + GFF2865 0.59 +0.0
288,881 + GFF2865 0.59 -0.9
288,882 - GFF2865 0.59 -0.2
288,882 - GFF2865 0.59 +0.5
288,882 - GFF2865 0.59 +0.1
289,279 + GFF2865 0.85 +2.8
289,279 + GFF2865 0.85 +0.6
289,279 + GFF2865 0.85 -0.1
289,279 + GFF2865 0.85 +0.1
289,279 + GFF2865 0.85 -0.6
289,279 + GFF2865 0.85 -0.2
289,280 - GFF2865 0.85 -0.5
289,280 - GFF2865 0.85 -0.2
289,280 - GFF2865 0.85 -0.1
289,280 - GFF2865 0.85 -0.7
289,280 - GFF2865 0.85 -0.3
289,333 + GFF2865 0.88 +1.6
289,333 + GFF2865 0.88 -0.8
289,333 + GFF2865 0.88 -0.1
289,333 + GFF2865 0.88 +0.1
289,334 - GFF2865 0.88 -0.5
289,334 - GFF2865 0.88 +0.6
289,334 - GFF2865 0.88 +0.1
289,334 - GFF2865 0.88 +1.1
289,334 - GFF2865 0.88 +1.1
289,334 - GFF2865 0.88 -1.4
289,447 + -1.3
289,447 + +1.7
289,447 + -0.6
289,447 + -0.8
289,448 - -0.8
289,448 - +0.6
289,448 - -0.2
289,499 + -0.4
289,499 + +0.1
289,499 + +0.8
289,499 + -0.1
289,500 - -0.1
289,500 - -1.9
289,500 - -0.6
289,500 - -0.5
289,546 - +0.9
289,546 - -0.6
289,563 + -0.2
289,564 - -1.2
289,564 - -1.0
289,564 - -1.1
289,644 + +0.8
289,644 + -0.4
289,644 + +0.1
289,644 + -2.4
289,644 + -0.4
289,644 + -1.3
289,644 + -1.2
289,644 + +0.1
289,644 + +0.8
289,644 + -0.1
289,645 - -0.1
289,645 - -0.0
289,645 - +0.0
289,645 - +0.1
289,645 - +0.3
289,910 + GFF2866 0.25 +0.2
289,910 + GFF2866 0.25 +0.4
289,911 - GFF2866 0.25 +1.8
289,911 - GFF2866 0.25 +0.1
289,911 - GFF2866 0.25 -0.2
290,681 + +0.1
290,681 + +0.1
290,681 + -0.3
290,682 - -1.1
290,682 - -1.1
290,682 - -0.2
290,682 - -1.4
290,682 - +0.0
290,682 - +1.8
290,965 + GFF2867 0.13 -0.2
290,966 - GFF2867 0.13 +0.5
291,157 + GFF2867 0.27 -0.1
291,157 + GFF2867 0.27 -0.2
291,157 + GFF2867 0.27 -0.2
291,157 + GFF2867 0.27 -0.3
291,217 + GFF2867 0.32 +0.6
291,217 + GFF2867 0.32 -0.7
291,217 + GFF2867 0.32 +0.3
291,217 + GFF2867 0.32 +0.7
291,218 - GFF2867 0.32 +1.2
291,218 - GFF2867 0.32 -0.7
291,218 - GFF2867 0.32 -0.6
291,218 - GFF2867 0.32 -0.7
291,218 - GFF2867 0.32 -2.7
291,218 - GFF2867 0.32 -0.1
291,328 + GFF2867 0.40 -0.3
291,328 + GFF2867 0.40 -0.2
291,328 + GFF2867 0.40 +0.2
291,328 + GFF2867 0.40 +1.1
291,457 + GFF2867 0.49 +0.2
291,457 + GFF2867 0.49 +0.0

Or see this region's nucleotide sequence