Strain Fitness in Variovorax sp. SCN45 around GFF2830

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2828 and GFF2829 are separated by 65 nucleotidesGFF2829 and GFF2830 are separated by 55 nucleotidesGFF2830 and GFF2831 are separated by 14 nucleotides GFF2828 - Uncharacterized protein CC_3059, at 256,210 to 256,854 GFF2828 GFF2829 - Uncharacterized protein CC_3060, at 256,920 to 257,420 GFF2829 GFF2830 - Uncharacterized protein CC_3061, at 257,476 to 258,285 GFF2830 GFF2831 - FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated, at 258,300 to 259,304 GFF2831 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.552 kb on + strand, within GFF2828at 256.552 kb on + strand, within GFF2828at 256.552 kb on + strand, within GFF2828at 256.621 kb on + strand, within GFF2828at 256.622 kb on - strand, within GFF2828at 256.622 kb on - strand, within GFF2828at 256.622 kb on - strand, within GFF2828at 256.651 kb on + strand, within GFF2828at 256.651 kb on + strand, within GFF2828at 256.651 kb on + strand, within GFF2828at 256.651 kb on + strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.652 kb on - strand, within GFF2828at 256.899 kb on + strandat 256.899 kb on + strandat 256.900 kb on - strandat 257.001 kb on + strand, within GFF2829at 257.001 kb on + strand, within GFF2829at 257.002 kb on - strand, within GFF2829at 257.002 kb on - strand, within GFF2829at 257.014 kb on - strand, within GFF2829at 257.073 kb on + strand, within GFF2829at 257.073 kb on + strand, within GFF2829at 257.073 kb on + strand, within GFF2829at 257.073 kb on + strand, within GFF2829at 257.074 kb on - strand, within GFF2829at 257.074 kb on - strand, within GFF2829at 257.074 kb on - strand, within GFF2829at 257.074 kb on - strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.274 kb on + strand, within GFF2829at 257.275 kb on - strand, within GFF2829at 257.275 kb on - strand, within GFF2829at 257.275 kb on - strand, within GFF2829at 257.275 kb on - strand, within GFF2829at 257.275 kb on - strand, within GFF2829at 257.398 kb on + strandat 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.738 kb on + strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.739 kb on - strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.770 kb on + strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 257.771 kb on - strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.106 kb on + strand, within GFF2830at 258.107 kb on - strand, within GFF2830at 258.107 kb on - strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.187 kb on + strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.188 kb on - strand, within GFF2830at 258.189 kb on - strand, within GFF2830at 258.256 kb on + strandat 258.256 kb on + strandat 258.257 kb on - strandat 258.257 kb on - strandat 258.257 kb on - strandat 258.336 kb on + strandat 258.336 kb on + strandat 258.337 kb on - strandat 258.488 kb on + strand, within GFF2831at 258.488 kb on + strand, within GFF2831at 258.488 kb on + strand, within GFF2831at 258.854 kb on + strand, within GFF2831

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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256,552 + GFF2828 0.53 -1.5
256,552 + GFF2828 0.53 +1.8
256,552 + GFF2828 0.53 +0.6
256,621 + GFF2828 0.64 -0.9
256,622 - GFF2828 0.64 -0.2
256,622 - GFF2828 0.64 -0.2
256,622 - GFF2828 0.64 -0.0
256,651 + GFF2828 0.68 -0.2
256,651 + GFF2828 0.68 -0.0
256,651 + GFF2828 0.68 -1.5
256,651 + GFF2828 0.68 -2.1
256,652 - GFF2828 0.69 +0.0
256,652 - GFF2828 0.69 -1.2
256,652 - GFF2828 0.69 +0.9
256,652 - GFF2828 0.69 +0.5
256,652 - GFF2828 0.69 +0.1
256,652 - GFF2828 0.69 +0.2
256,652 - GFF2828 0.69 +0.4
256,652 - GFF2828 0.69 -1.0
256,652 - GFF2828 0.69 -2.2
256,652 - GFF2828 0.69 -0.4
256,899 + +0.5
256,899 + -1.2
256,900 - -0.4
257,001 + GFF2829 0.16 -0.4
257,001 + GFF2829 0.16 -0.3
257,002 - GFF2829 0.16 -1.9
257,002 - GFF2829 0.16 -0.1
257,014 - GFF2829 0.19 -0.3
257,073 + GFF2829 0.31 +0.0
257,073 + GFF2829 0.31 +0.8
257,073 + GFF2829 0.31 -0.4
257,073 + GFF2829 0.31 -0.3
257,074 - GFF2829 0.31 -0.4
257,074 - GFF2829 0.31 -0.5
257,074 - GFF2829 0.31 -1.1
257,074 - GFF2829 0.31 -1.0
257,274 + GFF2829 0.71 -1.4
257,274 + GFF2829 0.71 -0.4
257,274 + GFF2829 0.71 -0.8
257,274 + GFF2829 0.71 -0.2
257,274 + GFF2829 0.71 -0.4
257,274 + GFF2829 0.71 -0.1
257,275 - GFF2829 0.71 -0.4
257,275 - GFF2829 0.71 -0.9
257,275 - GFF2829 0.71 +1.1
257,275 - GFF2829 0.71 -0.0
257,275 - GFF2829 0.71 -1.0
257,398 + +0.7
257,738 + GFF2830 0.32 -1.2
257,738 + GFF2830 0.32 +0.6
257,738 + GFF2830 0.32 -0.4
257,738 + GFF2830 0.32 +1.6
257,738 + GFF2830 0.32 -0.0
257,738 + GFF2830 0.32 +0.2
257,738 + GFF2830 0.32 +0.2
257,738 + GFF2830 0.32 +0.7
257,738 + GFF2830 0.32 +0.4
257,739 - GFF2830 0.32 +0.5
257,739 - GFF2830 0.32 -0.0
257,739 - GFF2830 0.32 -0.5
257,739 - GFF2830 0.32 -1.0
257,739 - GFF2830 0.32 +0.5
257,739 - GFF2830 0.32 -0.5
257,739 - GFF2830 0.32 -0.7
257,739 - GFF2830 0.32 +0.8
257,770 + GFF2830 0.36 +0.2
257,770 + GFF2830 0.36 +0.8
257,770 + GFF2830 0.36 +0.8
257,770 + GFF2830 0.36 +0.5
257,771 - GFF2830 0.36 -1.2
257,771 - GFF2830 0.36 +1.0
257,771 - GFF2830 0.36 -1.0
257,771 - GFF2830 0.36 -0.6
257,771 - GFF2830 0.36 -0.4
257,771 - GFF2830 0.36 -2.1
257,771 - GFF2830 0.36 +0.6
257,771 - GFF2830 0.36 -2.3
257,771 - GFF2830 0.36 +0.2
257,771 - GFF2830 0.36 -0.7
257,771 - GFF2830 0.36 +0.0
257,771 - GFF2830 0.36 +0.4
258,106 + GFF2830 0.78 -0.1
258,106 + GFF2830 0.78 -0.1
258,106 + GFF2830 0.78 -2.4
258,107 - GFF2830 0.78 +0.8
258,107 - GFF2830 0.78 -0.3
258,187 + GFF2830 0.88 -0.0
258,187 + GFF2830 0.88 -0.5
258,187 + GFF2830 0.88 +0.8
258,187 + GFF2830 0.88 -0.8
258,187 + GFF2830 0.88 +0.3
258,187 + GFF2830 0.88 -0.0
258,187 + GFF2830 0.88 +1.3
258,187 + GFF2830 0.88 +0.6
258,187 + GFF2830 0.88 -0.4
258,187 + GFF2830 0.88 -0.2
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 +0.3
258,187 + GFF2830 0.88 +0.4
258,187 + GFF2830 0.88 -0.2
258,187 + GFF2830 0.88 +0.1
258,187 + GFF2830 0.88 -1.0
258,187 + GFF2830 0.88 -0.4
258,187 + GFF2830 0.88 -1.3
258,187 + GFF2830 0.88 -0.7
258,187 + GFF2830 0.88 -0.4
258,187 + GFF2830 0.88 +0.8
258,187 + GFF2830 0.88 +1.0
258,187 + GFF2830 0.88 -2.6
258,187 + GFF2830 0.88 -0.7
258,187 + GFF2830 0.88 -0.0
258,187 + GFF2830 0.88 +0.9
258,187 + GFF2830 0.88 -0.6
258,187 + GFF2830 0.88 +0.2
258,187 + GFF2830 0.88 -0.5
258,187 + GFF2830 0.88 -0.8
258,187 + GFF2830 0.88 -1.3
258,187 + GFF2830 0.88 +0.6
258,188 - GFF2830 0.88 +0.0
258,188 - GFF2830 0.88 +0.6
258,188 - GFF2830 0.88 +2.1
258,188 - GFF2830 0.88 -0.7
258,188 - GFF2830 0.88 +1.5
258,188 - GFF2830 0.88 -0.9
258,188 - GFF2830 0.88 +0.0
258,188 - GFF2830 0.88 -0.9
258,188 - GFF2830 0.88 -0.1
258,188 - GFF2830 0.88 -0.3
258,188 - GFF2830 0.88 +0.7
258,188 - GFF2830 0.88 +1.2
258,188 - GFF2830 0.88 -1.0
258,188 - GFF2830 0.88 +0.4
258,189 - GFF2830 0.88 +2.6
258,256 + -0.8
258,256 + +1.2
258,257 - -0.5
258,257 - -0.5
258,257 - -0.1
258,336 + +1.5
258,336 + -1.7
258,337 - -0.8
258,488 + GFF2831 0.19 +0.2
258,488 + GFF2831 0.19 -1.7
258,488 + GFF2831 0.19 +0.6
258,854 + GFF2831 0.55 -0.2

Or see this region's nucleotide sequence