Strain Fitness in Variovorax sp. SCN45 around GFF2775

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2774 and GFF2775 are separated by 13 nucleotidesGFF2775 and GFF2776 are separated by 21 nucleotides GFF2774 - Auxin efflux carrier family protein, at 204,051 to 204,995 GFF2774 GFF2775 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 205,009 to 206,463 GFF2775 GFF2776 - hypothetical protein, at 206,485 to 207,528 GFF2776 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 204.024 kb on + strandat 204.057 kb on + strandat 204.058 kb on - strandat 204.096 kb on + strandat 204.096 kb on + strandat 204.096 kb on + strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.204 kb on + strand, within GFF2774at 204.204 kb on + strand, within GFF2774at 204.204 kb on + strand, within GFF2774at 204.207 kb on + strand, within GFF2774at 204.207 kb on + strand, within GFF2774at 204.208 kb on - strand, within GFF2774at 204.327 kb on + strand, within GFF2774at 204.328 kb on - strand, within GFF2774at 204.328 kb on - strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.906 kb on + strandat 204.906 kb on + strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.994 kb on - strandat 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.412 kb on + strand, within GFF2775at 205.412 kb on + strand, within GFF2775at 205.413 kb on - strand, within GFF2775at 205.413 kb on - strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.889 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.201 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.264 kb on + strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.265 kb on - strand, within GFF2775at 206.285 kb on + strand, within GFF2775at 206.286 kb on - strand, within GFF2775at 206.309 kb on + strand, within GFF2775at 206.310 kb on - strand, within GFF2775at 206.310 kb on - strand, within GFF2775at 206.390 kb on + strandat 206.390 kb on + strandat 206.390 kb on + strandat 206.390 kb on + strandat 206.391 kb on - strandat 206.408 kb on + strandat 206.408 kb on + strandat 206.409 kb on - strandat 206.409 kb on - strandat 206.531 kb on + strandat 206.531 kb on + strandat 206.531 kb on + strandat 206.532 kb on - strandat 206.532 kb on - strandat 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.763 kb on - strand, within GFF2776at 206.802 kb on - strand, within GFF2776at 206.810 kb on + strand, within GFF2776at 206.811 kb on - strand, within GFF2776at 206.915 kb on + strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.381 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
204,024 + -0.1
204,057 + -0.6
204,058 - -0.1
204,096 + +0.5
204,096 + +0.1
204,096 + +0.5
204,097 - -0.3
204,097 - -0.8
204,097 - -0.7
204,097 - -0.8
204,097 - -0.2
204,097 - +0.3
204,204 + GFF2774 0.16 -1.0
204,204 + GFF2774 0.16 +1.2
204,204 + GFF2774 0.16 -0.6
204,207 + GFF2774 0.17 -0.3
204,207 + GFF2774 0.17 +0.9
204,208 - GFF2774 0.17 -0.3
204,327 + GFF2774 0.29 +0.1
204,328 - GFF2774 0.29 +1.4
204,328 - GFF2774 0.29 -0.1
204,882 + GFF2774 0.88 -1.7
204,882 + GFF2774 0.88 -0.0
204,882 + GFF2774 0.88 +1.0
204,882 + GFF2774 0.88 +2.6
204,882 + GFF2774 0.88 -0.3
204,883 - GFF2774 0.88 +0.3
204,883 - GFF2774 0.88 +0.5
204,883 - GFF2774 0.88 +0.6
204,883 - GFF2774 0.88 -0.6
204,883 - GFF2774 0.88 -0.1
204,906 + -0.4
204,906 + -0.0
204,907 - -0.2
204,907 - -1.0
204,907 - +0.0
204,907 - -0.9
204,907 - +0.3
204,907 - +0.4
204,907 - -0.2
204,907 - -0.3
204,918 + -1.1
204,918 + -1.0
204,918 + -0.6
204,918 + -0.6
204,918 + -0.2
204,918 + -0.1
204,918 + +1.6
204,918 + -0.1
204,918 + -1.8
204,918 + +0.0
204,918 + +0.6
204,918 + -0.7
204,918 + -0.8
204,918 + +0.4
204,918 + -0.0
204,918 + +0.4
204,918 + +0.7
204,918 + +0.0
204,919 - +0.3
204,919 - -0.8
204,919 - -0.4
204,919 - -0.1
204,919 - -0.2
204,919 - -1.0
204,919 - +0.4
204,919 - +0.8
204,919 - +0.4
204,919 - +1.1
204,919 - +3.1
204,919 - +0.0
204,919 - -0.5
204,919 - -1.2
204,919 - +0.7
204,919 - +0.0
204,919 - -0.0
204,994 - +1.4
205,337 + GFF2775 0.23 +0.1
205,337 + GFF2775 0.23 +0.6
205,337 + GFF2775 0.23 +0.4
205,337 + GFF2775 0.23 +0.4
205,337 + GFF2775 0.23 -0.4
205,337 + GFF2775 0.23 -0.6
205,338 - GFF2775 0.23 -0.1
205,338 - GFF2775 0.23 -0.6
205,338 - GFF2775 0.23 +0.4
205,338 - GFF2775 0.23 -0.2
205,338 - GFF2775 0.23 -1.1
205,338 - GFF2775 0.23 -0.3
205,338 - GFF2775 0.23 -0.9
205,338 - GFF2775 0.23 +0.2
205,338 - GFF2775 0.23 +2.9
205,346 + GFF2775 0.23 -0.3
205,346 + GFF2775 0.23 +0.8
205,346 + GFF2775 0.23 -0.1
205,346 + GFF2775 0.23 -0.6
205,346 + GFF2775 0.23 +0.0
205,347 - GFF2775 0.23 +0.8
205,347 - GFF2775 0.23 +0.3
205,347 - GFF2775 0.23 -0.3
205,347 - GFF2775 0.23 +0.2
205,347 - GFF2775 0.23 +0.3
205,347 - GFF2775 0.23 +2.2
205,347 - GFF2775 0.23 -0.6
205,412 + GFF2775 0.28 -1.0
205,412 + GFF2775 0.28 -0.6
205,413 - GFF2775 0.28 -1.8
205,413 - GFF2775 0.28 -1.0
205,796 + GFF2775 0.54 +1.5
205,796 + GFF2775 0.54 -0.7
205,796 + GFF2775 0.54 -0.6
205,797 - GFF2775 0.54 +0.1
205,797 - GFF2775 0.54 -0.4
205,853 + GFF2775 0.58 +0.2
205,853 + GFF2775 0.58 +0.3
205,854 - GFF2775 0.58 +0.3
205,854 - GFF2775 0.58 -0.4
205,889 + GFF2775 0.60 -0.6
206,201 + GFF2775 0.82 +0.2
206,201 + GFF2775 0.82 +1.2
206,201 + GFF2775 0.82 -0.1
206,201 + GFF2775 0.82 +0.7
206,264 + GFF2775 0.86 +0.4
206,264 + GFF2775 0.86 +0.4
206,264 + GFF2775 0.86 -0.3
206,264 + GFF2775 0.86 +0.1
206,264 + GFF2775 0.86 -0.5
206,264 + GFF2775 0.86 +0.2
206,264 + GFF2775 0.86 +0.0
206,264 + GFF2775 0.86 +0.2
206,264 + GFF2775 0.86 -0.2
206,264 + GFF2775 0.86 -0.6
206,264 + GFF2775 0.86 -0.0
206,265 - GFF2775 0.86 -0.2
206,265 - GFF2775 0.86 +0.2
206,265 - GFF2775 0.86 +0.1
206,265 - GFF2775 0.86 +0.2
206,265 - GFF2775 0.86 +1.4
206,265 - GFF2775 0.86 -0.8
206,265 - GFF2775 0.86 +0.4
206,265 - GFF2775 0.86 -0.4
206,265 - GFF2775 0.86 -0.3
206,265 - GFF2775 0.86 -2.4
206,285 + GFF2775 0.88 -0.1
206,286 - GFF2775 0.88 -0.6
206,309 + GFF2775 0.89 +0.2
206,310 - GFF2775 0.89 -1.1
206,310 - GFF2775 0.89 +0.9
206,390 + -0.6
206,390 + -0.4
206,390 + -1.0
206,390 + -0.9
206,391 - -0.4
206,408 + -1.2
206,408 + +0.4
206,409 - +0.4
206,409 - +1.4
206,531 + +1.4
206,531 + -0.6
206,531 + -0.2
206,532 - +1.0
206,532 - -1.8
206,762 + GFF2776 0.27 +0.0
206,762 + GFF2776 0.27 -0.0
206,762 + GFF2776 0.27 -0.6
206,762 + GFF2776 0.27 -0.5
206,762 + GFF2776 0.27 -1.6
206,763 - GFF2776 0.27 -0.5
206,802 - GFF2776 0.30 -0.9
206,810 + GFF2776 0.31 +0.6
206,811 - GFF2776 0.31 -1.4
206,915 + GFF2776 0.41 -0.5
206,916 - GFF2776 0.41 +0.7
206,916 - GFF2776 0.41 +0.2
206,916 - GFF2776 0.41 +0.1
206,916 - GFF2776 0.41 +0.0
206,916 - GFF2776 0.41 +0.3
206,916 - GFF2776 0.41 +0.1
207,132 - GFF2776 0.62 +0.2
207,132 - GFF2776 0.62 +0.6
207,132 - GFF2776 0.62 -0.6
207,132 - GFF2776 0.62 +1.0
207,381 - GFF2776 0.86 +1.0
207,408 - GFF2776 0.88 -0.8
207,408 - GFF2776 0.88 -0.1

Or see this region's nucleotide sequence