Strain Fitness in Variovorax sp. SCN45 around GFF2763

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2762 and GFF2763 are separated by 236 nucleotidesGFF2763 and GFF2764 are separated by 37 nucleotidesGFF2764 and GFF2765 are separated by 37 nucleotides GFF2762 - Glutamine ABC transporter, substrate-binding protein GlnH, at 193,476 to 194,225 GFF2762 GFF2763 - 33 kDa chaperonin HslO, at 194,462 to 195,460 GFF2763 GFF2764 - Carbonic anhydrase-like protein MJ0304, at 195,498 to 196,022 GFF2764 GFF2765 - FIG00005326: uncharacterized protein, at 196,060 to 196,872 GFF2765 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.513 kb on + strandat 193.513 kb on + strandat 193.513 kb on + strandat 193.513 kb on + strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.514 kb on - strandat 193.607 kb on - strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.669 kb on + strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.670 kb on - strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.672 kb on + strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.673 kb on - strand, within GFF2762at 193.732 kb on + strand, within GFF2762at 193.733 kb on - strand, within GFF2762at 193.733 kb on - strand, within GFF2762at 193.792 kb on + strand, within GFF2762at 193.900 kb on + strand, within GFF2762at 193.901 kb on - strand, within GFF2762at 193.901 kb on - strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.903 kb on + strand, within GFF2762at 193.904 kb on - strand, within GFF2762at 193.904 kb on - strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.029 kb on + strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.030 kb on - strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.086 kb on + strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.087 kb on - strand, within GFF2762at 194.243 kb on - strandat 194.243 kb on - strandat 194.243 kb on - strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.463 kb on + strandat 194.464 kb on - strandat 194.471 kb on + strandat 194.471 kb on + strandat 194.542 kb on - strandat 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.808 kb on + strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.809 kb on - strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.982 kb on + strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 194.983 kb on - strand, within GFF2763at 195.055 kb on - strand, within GFF2763at 195.055 kb on - strand, within GFF2763at 195.242 kb on + strand, within GFF2763at 195.242 kb on + strand, within GFF2763at 195.242 kb on + strand, within GFF2763at 195.242 kb on + strand, within GFF2763at 195.339 kb on + strand, within GFF2763at 195.356 kb on - strand, within GFF2763at 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.547 kb on + strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.548 kb on - strandat 195.708 kb on - strand, within GFF2764at 195.708 kb on - strand, within GFF2764at 195.708 kb on - strand, within GFF2764at 195.912 kb on + strand, within GFF2764at 195.912 kb on + strand, within GFF2764at 195.912 kb on + strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 195.913 kb on - strand, within GFF2764at 196.012 kb on + strandat 196.012 kb on + strandat 196.012 kb on + strandat 196.013 kb on - strandat 196.013 kb on - strandat 196.047 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.055 kb on + strandat 196.056 kb on - strandat 196.056 kb on - strandat 196.056 kb on - strandat 196.056 kb on - strandat 196.056 kb on - strandat 196.056 kb on - strandat 196.378 kb on + strand, within GFF2765at 196.378 kb on + strand, within GFF2765at 196.378 kb on + strand, within GFF2765at 196.378 kb on + strand, within GFF2765at 196.378 kb on + strand, within GFF2765at 196.379 kb on - strand, within GFF2765at 196.379 kb on - strand, within GFF2765at 196.379 kb on - strand, within GFF2765at 196.382 kb on - strand, within GFF2765at 196.382 kb on - strand, within GFF2765at 196.459 kb on + strand, within GFF2765

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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193,513 + +1.8
193,513 + +1.8
193,513 + +0.1
193,513 + +2.8
193,514 - +0.0
193,514 - +2.3
193,514 - +0.4
193,514 - +0.3
193,607 - GFF2762 0.17 -1.3
193,669 + GFF2762 0.26 -1.0
193,669 + GFF2762 0.26 -0.1
193,669 + GFF2762 0.26 +0.1
193,669 + GFF2762 0.26 -1.1
193,669 + GFF2762 0.26 +0.2
193,669 + GFF2762 0.26 -0.0
193,669 + GFF2762 0.26 -0.1
193,669 + GFF2762 0.26 +0.3
193,669 + GFF2762 0.26 +0.4
193,669 + GFF2762 0.26 +0.0
193,669 + GFF2762 0.26 +0.5
193,670 - GFF2762 0.26 +0.2
193,670 - GFF2762 0.26 +0.2
193,670 - GFF2762 0.26 -0.6
193,670 - GFF2762 0.26 +0.4
193,670 - GFF2762 0.26 +0.7
193,670 - GFF2762 0.26 +0.1
193,670 - GFF2762 0.26 +0.4
193,670 - GFF2762 0.26 -0.0
193,670 - GFF2762 0.26 +1.4
193,670 - GFF2762 0.26 -0.2
193,670 - GFF2762 0.26 -1.2
193,672 + GFF2762 0.26 +0.8
193,672 + GFF2762 0.26 -0.5
193,672 + GFF2762 0.26 +0.0
193,672 + GFF2762 0.26 -0.0
193,672 + GFF2762 0.26 -0.5
193,672 + GFF2762 0.26 -1.6
193,672 + GFF2762 0.26 +0.1
193,673 - GFF2762 0.26 -0.3
193,673 - GFF2762 0.26 +0.4
193,673 - GFF2762 0.26 -1.1
193,732 + GFF2762 0.34 -0.1
193,733 - GFF2762 0.34 -0.3
193,733 - GFF2762 0.34 -0.6
193,792 + GFF2762 0.42 -0.6
193,900 + GFF2762 0.57 -0.9
193,901 - GFF2762 0.57 +0.2
193,901 - GFF2762 0.57 -0.9
193,903 + GFF2762 0.57 -2.3
193,903 + GFF2762 0.57 +0.4
193,903 + GFF2762 0.57 -0.6
193,904 - GFF2762 0.57 -0.7
193,904 - GFF2762 0.57 -0.1
194,029 + GFF2762 0.74 +0.4
194,029 + GFF2762 0.74 -0.3
194,029 + GFF2762 0.74 +0.1
194,029 + GFF2762 0.74 +2.1
194,029 + GFF2762 0.74 +1.0
194,030 - GFF2762 0.74 +1.2
194,030 - GFF2762 0.74 +0.2
194,030 - GFF2762 0.74 -0.9
194,086 + GFF2762 0.81 +0.2
194,086 + GFF2762 0.81 +0.4
194,086 + GFF2762 0.81 -1.3
194,086 + GFF2762 0.81 +0.4
194,086 + GFF2762 0.81 +0.7
194,086 + GFF2762 0.81 -0.2
194,087 - GFF2762 0.81 -0.3
194,087 - GFF2762 0.81 +2.2
194,087 - GFF2762 0.81 +0.2
194,087 - GFF2762 0.81 -1.2
194,087 - GFF2762 0.81 +1.4
194,087 - GFF2762 0.81 +0.8
194,087 - GFF2762 0.81 +0.1
194,087 - GFF2762 0.81 +0.4
194,087 - GFF2762 0.81 +0.2
194,087 - GFF2762 0.81 -1.0
194,087 - GFF2762 0.81 -1.1
194,087 - GFF2762 0.81 -1.1
194,087 - GFF2762 0.81 -0.9
194,087 - GFF2762 0.81 -0.5
194,087 - GFF2762 0.81 +0.2
194,243 - +0.6
194,243 - -0.1
194,243 - -0.3
194,463 + -0.3
194,463 + +0.0
194,463 + -1.3
194,463 + -1.3
194,463 + -0.4
194,464 - -1.2
194,471 + -0.2
194,471 + -0.0
194,542 - +0.0
194,808 + GFF2763 0.35 +0.7
194,808 + GFF2763 0.35 -0.6
194,808 + GFF2763 0.35 -0.4
194,808 + GFF2763 0.35 +0.6
194,808 + GFF2763 0.35 -0.1
194,808 + GFF2763 0.35 +0.2
194,808 + GFF2763 0.35 +0.0
194,808 + GFF2763 0.35 +0.6
194,808 + GFF2763 0.35 -0.6
194,808 + GFF2763 0.35 -0.1
194,808 + GFF2763 0.35 -1.5
194,808 + GFF2763 0.35 +1.2
194,809 - GFF2763 0.35 +0.3
194,809 - GFF2763 0.35 +1.1
194,809 - GFF2763 0.35 +0.6
194,809 - GFF2763 0.35 -1.0
194,809 - GFF2763 0.35 +0.1
194,809 - GFF2763 0.35 +0.0
194,809 - GFF2763 0.35 -0.6
194,982 + GFF2763 0.52 +0.6
194,982 + GFF2763 0.52 +0.5
194,982 + GFF2763 0.52 +0.9
194,982 + GFF2763 0.52 +0.5
194,982 + GFF2763 0.52 -2.0
194,982 + GFF2763 0.52 -0.3
194,982 + GFF2763 0.52 +0.3
194,982 + GFF2763 0.52 +2.1
194,982 + GFF2763 0.52 +0.8
194,982 + GFF2763 0.52 +1.6
194,982 + GFF2763 0.52 -0.0
194,982 + GFF2763 0.52 -0.6
194,982 + GFF2763 0.52 -1.1
194,982 + GFF2763 0.52 -1.4
194,983 - GFF2763 0.52 -0.3
194,983 - GFF2763 0.52 +1.4
194,983 - GFF2763 0.52 -0.2
194,983 - GFF2763 0.52 +0.5
194,983 - GFF2763 0.52 -0.2
194,983 - GFF2763 0.52 -0.8
194,983 - GFF2763 0.52 +0.2
194,983 - GFF2763 0.52 -1.0
194,983 - GFF2763 0.52 -0.2
194,983 - GFF2763 0.52 -0.4
194,983 - GFF2763 0.52 +2.4
194,983 - GFF2763 0.52 -0.4
194,983 - GFF2763 0.52 -0.0
194,983 - GFF2763 0.52 -0.4
194,983 - GFF2763 0.52 -0.6
194,983 - GFF2763 0.52 -0.4
194,983 - GFF2763 0.52 +0.5
194,983 - GFF2763 0.52 +0.0
194,983 - GFF2763 0.52 -0.0
195,055 - GFF2763 0.59 -0.2
195,055 - GFF2763 0.59 -0.5
195,242 + GFF2763 0.78 -0.0
195,242 + GFF2763 0.78 +0.0
195,242 + GFF2763 0.78 +1.4
195,242 + GFF2763 0.78 -0.2
195,339 + GFF2763 0.88 -1.2
195,356 - GFF2763 0.89 +0.2
195,547 + +0.4
195,547 + -0.0
195,547 + -0.9
195,547 + -1.4
195,547 + -0.2
195,547 + -1.3
195,547 + +0.6
195,547 + -1.6
195,547 + +0.3
195,547 + -0.9
195,547 + +0.5
195,547 + -0.6
195,547 + +0.1
195,547 + -0.6
195,547 + -0.8
195,548 - +0.5
195,548 - -0.1
195,548 - +0.6
195,548 - +2.8
195,548 - +0.8
195,548 - -0.9
195,548 - -0.8
195,548 - +0.5
195,548 - +0.5
195,548 - -0.2
195,548 - -0.5
195,548 - -0.4
195,548 - +0.2
195,548 - -0.8
195,548 - -0.4
195,548 - +0.6
195,548 - -1.0
195,708 - GFF2764 0.40 +0.0
195,708 - GFF2764 0.40 -1.7
195,708 - GFF2764 0.40 -0.2
195,912 + GFF2764 0.79 -0.0
195,912 + GFF2764 0.79 +0.6
195,912 + GFF2764 0.79 +0.6
195,913 - GFF2764 0.79 +0.8
195,913 - GFF2764 0.79 +0.8
195,913 - GFF2764 0.79 -0.8
195,913 - GFF2764 0.79 -0.2
195,913 - GFF2764 0.79 -2.1
195,913 - GFF2764 0.79 -0.3
196,012 + +0.2
196,012 + -1.3
196,012 + -0.1
196,013 - +0.6
196,013 - +1.8
196,047 + -1.6
196,055 + -0.9
196,055 + -0.3
196,055 + +0.4
196,055 + +1.8
196,055 + -0.2
196,055 + -1.0
196,055 + +2.4
196,055 + -2.4
196,056 - +1.0
196,056 - +0.8
196,056 - +0.4
196,056 - +0.1
196,056 - +0.2
196,056 - -1.2
196,378 + GFF2765 0.39 -0.6
196,378 + GFF2765 0.39 -0.3
196,378 + GFF2765 0.39 -0.4
196,378 + GFF2765 0.39 -0.3
196,378 + GFF2765 0.39 -0.2
196,379 - GFF2765 0.39 -0.2
196,379 - GFF2765 0.39 -1.3
196,379 - GFF2765 0.39 -2.4
196,382 - GFF2765 0.40 -1.7
196,382 - GFF2765 0.40 +0.2
196,459 + GFF2765 0.49 -1.0

Or see this region's nucleotide sequence