Strain Fitness in Variovorax sp. SCN45 around GFF26

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
30,003	-		GFF25	0.70	+0.8
30,003	-		GFF25	0.70	+0.2
30,003	-		GFF25	0.70	+0.6
30,003	-		GFF25	0.70	+0.3
30,003	-		GFF25	0.70	-0.8
30,110	+		GFF25	0.79	+1.0
30,111	-		GFF25	0.79	-0.1
30,111	-		GFF25	0.79	+0.0
30,332	+				-0.3
30,333	-				+1.2
30,333	-				-0.1
30,394	+				+0.3
30,395	-				+1.1
30,476	+				+1.7
30,631	-		GFF26	0.15	-1.1
30,735	+		GFF26	0.26	-1.5
30,735	+		GFF26	0.26	-1.3
30,771	+		GFF26	0.29	+0.1
31,080	+		GFF26	0.61	-0.6
31,081	-		GFF26	0.61	-1.9
31,081	-		GFF26	0.61	-0.0
31,179	+		GFF26	0.71	-0.1
31,179	+		GFF26	0.71	-1.7
31,180	-		GFF26	0.71	-0.7
31,180	-		GFF26	0.71	+0.1
31,180	-		GFF26	0.71	+1.5
31,180	-		GFF26	0.71	+0.2
31,309	-		GFF26	0.84	-1.1
31,356	+		GFF26	0.89	-0.7
31,562	+		GFF27	0.12	+0.5
31,562	+		GFF27	0.12	-0.5
31,563	-		GFF27	0.12	+1.7
31,563	-		GFF27	0.12	+0.3
31,563	-		GFF27	0.12	+0.4
31,563	-		GFF27	0.12	-0.3
31,563	-		GFF27	0.12	-1.2
31,563	-		GFF27	0.12	-1.1
31,563	-		GFF27	0.12	-1.0
31,571	+		GFF27	0.13	-0.3
31,595	+		GFF27	0.15	-0.7
31,619	+		GFF27	0.18	+0.3
31,620	-		GFF27	0.18	+0.8
31,655	+		GFF27	0.22	-0.6
31,655	+		GFF27	0.22	-0.9
31,656	-		GFF27	0.22	+1.5
31,811	+		GFF27	0.40	+0.5
31,811	+		GFF27	0.40	+0.2
31,811	+		GFF27	0.40	-0.1
31,811	+		GFF27	0.40	-1.4
31,811	+		GFF27	0.40	+1.5
31,811	+		GFF27	0.40	+0.3
31,811	+		GFF27	0.40	-1.0
31,812	-		GFF27	0.40	-0.3
31,812	-		GFF27	0.40	-0.4
31,812	-		GFF27	0.40	+0.3
31,812	-		GFF27	0.40	-1.9
31,812	-		GFF27	0.40	+0.5
31,883	+		GFF27	0.48	-0.5
31,883	+		GFF27	0.48	-0.0
32,249	+				-0.4
32,249	+				-0.2
32,249	+				+0.6
32,249	+				+1.1
32,250	-				-0.0
32,250	-				-0.8
32,250	-				-0.8
32,250	-				+1.8
32,250	-				-0.7
32,264	+				+1.1
32,264	+				-0.2
32,264	+				+0.2
32,265	-				+0.2
32,379	-				-0.3