Strain Fitness in Variovorax sp. SCN45 around GFF2521

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2520 and GFF2521 are separated by 51 nucleotidesGFF2521 and GFF2522 are separated by 16 nucleotidesGFF2522 and GFF2523 are separated by 29 nucleotides GFF2520 - UPF0053 inner membrane protein YtfL, at 581,305 to 582,615 GFF2520 GFF2521 - FIG00931781: hypothetical protein, at 582,667 to 583,185 GFF2521 GFF2522 - Glutaredoxin-related protein, at 583,202 to 583,531 GFF2522 GFF2523 - Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297), at 583,561 to 584,412 GFF2523 Position (kb) 582 583 584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 581.721 kb on - strand, within GFF2520at 581.834 kb on + strand, within GFF2520at 581.834 kb on + strand, within GFF2520at 581.835 kb on - strand, within GFF2520at 581.835 kb on - strand, within GFF2520at 581.873 kb on + strand, within GFF2520at 582.362 kb on + strand, within GFF2520at 582.363 kb on - strand, within GFF2520at 582.440 kb on + strand, within GFF2520at 582.440 kb on + strand, within GFF2520at 582.441 kb on - strand, within GFF2520at 582.441 kb on - strand, within GFF2520at 582.441 kb on - strand, within GFF2520at 582.441 kb on - strand, within GFF2520at 582.441 kb on - strand, within GFF2520at 582.626 kb on + strandat 582.626 kb on + strandat 582.626 kb on + strandat 582.627 kb on - strandat 582.627 kb on - strandat 582.627 kb on - strandat 582.627 kb on - strandat 582.707 kb on - strandat 582.830 kb on + strand, within GFF2521at 582.830 kb on + strand, within GFF2521at 582.830 kb on + strand, within GFF2521at 582.830 kb on + strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.831 kb on - strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.842 kb on + strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.843 kb on - strand, within GFF2521at 582.900 kb on + strand, within GFF2521at 582.901 kb on - strand, within GFF2521at 582.901 kb on - strand, within GFF2521at 582.901 kb on - strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.923 kb on + strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 582.924 kb on - strand, within GFF2521at 583.200 kb on + strandat 583.200 kb on + strandat 583.249 kb on + strand, within GFF2522at 583.249 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.251 kb on + strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.252 kb on - strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.299 kb on + strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.300 kb on - strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.329 kb on + strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.330 kb on - strand, within GFF2522at 583.510 kb on + strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.510 kb on + strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.511 kb on - strandat 583.562 kb on + strandat 583.562 kb on + strandat 583.562 kb on + strandat 583.562 kb on + strandat 583.563 kb on - strandat 583.563 kb on - strandat 583.563 kb on - strandat 583.563 kb on - strandat 583.563 kb on - strandat 583.838 kb on + strand, within GFF2523at 583.838 kb on + strand, within GFF2523at 583.838 kb on + strand, within GFF2523at 583.838 kb on + strand, within GFF2523at 583.839 kb on - strand, within GFF2523at 583.968 kb on + strand, within GFF2523at 584.183 kb on + strand, within GFF2523

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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581,721 - GFF2520 0.32 -0.3
581,834 + GFF2520 0.40 -1.5
581,834 + GFF2520 0.40 -0.9
581,835 - GFF2520 0.40 +0.0
581,835 - GFF2520 0.40 +0.9
581,873 + GFF2520 0.43 +0.9
582,362 + GFF2520 0.81 +1.2
582,363 - GFF2520 0.81 -0.8
582,440 + GFF2520 0.87 +0.2
582,440 + GFF2520 0.87 -3.1
582,441 - GFF2520 0.87 -0.4
582,441 - GFF2520 0.87 -0.5
582,441 - GFF2520 0.87 -0.5
582,441 - GFF2520 0.87 -0.2
582,441 - GFF2520 0.87 -1.7
582,626 + +0.3
582,626 + -0.5
582,626 + +0.0
582,627 - +0.2
582,627 - -0.3
582,627 - -0.7
582,627 - +0.3
582,707 - -0.4
582,830 + GFF2521 0.31 +0.5
582,830 + GFF2521 0.31 +0.8
582,830 + GFF2521 0.31 +0.3
582,830 + GFF2521 0.31 -2.8
582,831 - GFF2521 0.32 +0.6
582,831 - GFF2521 0.32 +0.8
582,831 - GFF2521 0.32 +0.4
582,831 - GFF2521 0.32 -1.7
582,831 - GFF2521 0.32 -0.8
582,831 - GFF2521 0.32 -1.4
582,831 - GFF2521 0.32 +0.5
582,831 - GFF2521 0.32 +1.1
582,842 + GFF2521 0.34 -0.4
582,842 + GFF2521 0.34 -0.4
582,842 + GFF2521 0.34 -0.7
582,842 + GFF2521 0.34 -0.1
582,842 + GFF2521 0.34 +0.8
582,842 + GFF2521 0.34 -0.3
582,843 - GFF2521 0.34 -0.4
582,843 - GFF2521 0.34 -0.1
582,843 - GFF2521 0.34 +0.2
582,843 - GFF2521 0.34 -0.1
582,843 - GFF2521 0.34 -1.4
582,843 - GFF2521 0.34 -0.3
582,843 - GFF2521 0.34 -0.1
582,843 - GFF2521 0.34 +0.8
582,843 - GFF2521 0.34 +0.4
582,843 - GFF2521 0.34 -0.3
582,900 + GFF2521 0.45 +0.1
582,901 - GFF2521 0.45 +1.2
582,901 - GFF2521 0.45 -0.2
582,901 - GFF2521 0.45 +0.0
582,923 + GFF2521 0.49 -1.2
582,923 + GFF2521 0.49 +0.6
582,923 + GFF2521 0.49 -0.4
582,923 + GFF2521 0.49 +0.4
582,923 + GFF2521 0.49 +0.4
582,923 + GFF2521 0.49 +0.3
582,923 + GFF2521 0.49 +0.1
582,923 + GFF2521 0.49 -0.5
582,923 + GFF2521 0.49 -1.7
582,923 + GFF2521 0.49 -0.3
582,923 + GFF2521 0.49 -0.4
582,923 + GFF2521 0.49 -1.0
582,923 + GFF2521 0.49 +1.9
582,923 + GFF2521 0.49 +0.1
582,923 + GFF2521 0.49 -0.7
582,923 + GFF2521 0.49 -0.0
582,923 + GFF2521 0.49 -0.5
582,923 + GFF2521 0.49 +0.3
582,923 + GFF2521 0.49 -1.5
582,923 + GFF2521 0.49 -0.1
582,923 + GFF2521 0.49 -0.5
582,923 + GFF2521 0.49 -0.5
582,923 + GFF2521 0.49 -0.4
582,923 + GFF2521 0.49 +1.9
582,923 + GFF2521 0.49 +0.7
582,924 - GFF2521 0.50 -0.5
582,924 - GFF2521 0.50 -0.1
582,924 - GFF2521 0.50 +1.3
582,924 - GFF2521 0.50 -0.0
582,924 - GFF2521 0.50 -0.9
582,924 - GFF2521 0.50 -0.4
582,924 - GFF2521 0.50 +1.1
582,924 - GFF2521 0.50 +0.8
582,924 - GFF2521 0.50 +1.5
582,924 - GFF2521 0.50 -2.0
582,924 - GFF2521 0.50 -0.2
582,924 - GFF2521 0.50 -0.5
582,924 - GFF2521 0.50 +1.1
582,924 - GFF2521 0.50 -0.3
582,924 - GFF2521 0.50 -0.4
582,924 - GFF2521 0.50 -0.2
582,924 - GFF2521 0.50 -0.4
582,924 - GFF2521 0.50 -0.4
582,924 - GFF2521 0.50 +0.1
582,924 - GFF2521 0.50 -0.4
583,200 + +0.0
583,200 + -0.2
583,249 + GFF2522 0.14 -0.2
583,249 + GFF2522 0.14 -0.4
583,251 + GFF2522 0.15 +1.5
583,251 + GFF2522 0.15 -1.2
583,251 + GFF2522 0.15 +0.5
583,251 + GFF2522 0.15 -0.1
583,251 + GFF2522 0.15 +0.1
583,251 + GFF2522 0.15 +0.2
583,251 + GFF2522 0.15 -1.8
583,251 + GFF2522 0.15 -0.4
583,251 + GFF2522 0.15 +0.2
583,251 + GFF2522 0.15 +0.5
583,251 + GFF2522 0.15 +1.9
583,251 + GFF2522 0.15 -0.0
583,251 + GFF2522 0.15 -0.4
583,251 + GFF2522 0.15 -1.3
583,251 + GFF2522 0.15 -0.5
583,251 + GFF2522 0.15 +0.1
583,251 + GFF2522 0.15 +0.3
583,251 + GFF2522 0.15 -1.4
583,251 + GFF2522 0.15 +0.5
583,252 - GFF2522 0.15 -1.0
583,252 - GFF2522 0.15 -0.8
583,252 - GFF2522 0.15 +1.5
583,252 - GFF2522 0.15 +0.1
583,252 - GFF2522 0.15 -1.2
583,252 - GFF2522 0.15 -0.2
583,252 - GFF2522 0.15 -1.8
583,252 - GFF2522 0.15 +0.9
583,252 - GFF2522 0.15 +1.3
583,252 - GFF2522 0.15 -0.1
583,252 - GFF2522 0.15 +0.3
583,252 - GFF2522 0.15 +0.3
583,252 - GFF2522 0.15 +0.2
583,252 - GFF2522 0.15 -0.4
583,252 - GFF2522 0.15 -0.4
583,252 - GFF2522 0.15 -0.1
583,299 + GFF2522 0.29 +0.2
583,299 + GFF2522 0.29 -0.7
583,299 + GFF2522 0.29 +0.5
583,299 + GFF2522 0.29 +0.8
583,299 + GFF2522 0.29 -0.7
583,299 + GFF2522 0.29 -0.2
583,299 + GFF2522 0.29 -0.1
583,299 + GFF2522 0.29 +0.5
583,300 - GFF2522 0.30 +0.7
583,300 - GFF2522 0.30 +0.3
583,300 - GFF2522 0.30 +0.3
583,300 - GFF2522 0.30 -0.0
583,300 - GFF2522 0.30 +0.6
583,300 - GFF2522 0.30 -0.1
583,300 - GFF2522 0.30 -0.1
583,329 + GFF2522 0.38 -0.2
583,329 + GFF2522 0.38 +0.7
583,329 + GFF2522 0.38 +0.2
583,329 + GFF2522 0.38 -0.5
583,329 + GFF2522 0.38 -0.1
583,329 + GFF2522 0.38 +0.4
583,329 + GFF2522 0.38 +0.9
583,329 + GFF2522 0.38 +1.2
583,329 + GFF2522 0.38 -0.8
583,330 - GFF2522 0.39 -1.5
583,330 - GFF2522 0.39 -0.4
583,330 - GFF2522 0.39 -0.1
583,330 - GFF2522 0.39 -0.1
583,330 - GFF2522 0.39 -0.1
583,330 - GFF2522 0.39 -0.4
583,330 - GFF2522 0.39 +0.3
583,330 - GFF2522 0.39 -0.4
583,510 + -0.5
583,510 + +0.9
583,510 + -1.2
583,510 + -0.8
583,510 + +0.0
583,510 + -0.2
583,510 + -0.7
583,511 - +1.4
583,511 - +0.5
583,511 - +0.0
583,511 - -1.1
583,511 - -0.0
583,511 - -0.3
583,511 - -0.7
583,511 - -0.2
583,562 + -0.2
583,562 + -0.5
583,562 + +0.2
583,562 + +0.3
583,563 - +1.1
583,563 - -0.1
583,563 - +0.2
583,563 - +0.2
583,563 - -0.4
583,838 + GFF2523 0.33 +0.1
583,838 + GFF2523 0.33 -0.4
583,838 + GFF2523 0.33 -0.4
583,838 + GFF2523 0.33 -0.1
583,839 - GFF2523 0.33 +0.8
583,968 + GFF2523 0.48 +0.1
584,183 + GFF2523 0.73 +0.2

Or see this region's nucleotide sequence