Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2454 and GFF2455 overlap by 4 nucleotides GFF2455 and GFF2457 are separated by 325 nucleotides GFF2457 and GFF2456 overlap by 2 nucleotides
GFF2454 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 511,325 to 512,776
GFF2454
GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465
GFF2455
GFF2457 - no description, at 513,791 to 514,078
GFF2457
GFF2456 - no description, at 514,077 to 514,409
GFF2456
Position (kb) 512
513
514 Strain fitness (log2 ratio) -1
0
1
2 at 512.705 kb on + strand at 512.705 kb on + strand at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.941 kb on + strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 513.061 kb on + strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.578 kb on - strand at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.942 kb on - strand, within GFF2457
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 512,705 + -0.8 512,705 + -0.8 512,938 + GFF2455 0.24 +0.2 512,938 + GFF2455 0.24 -0.3 512,938 + GFF2455 0.24 +0.2 512,939 - GFF2455 0.24 +0.9 512,939 - GFF2455 0.24 +0.6 512,939 - GFF2455 0.24 +1.2 512,939 - GFF2455 0.24 +0.1 512,941 + GFF2455 0.24 +1.3 512,942 - GFF2455 0.24 +0.2 512,942 - GFF2455 0.24 +0.8 512,942 - GFF2455 0.24 +0.0 512,942 - GFF2455 0.24 +0.3 512,942 - GFF2455 0.24 +0.5 513,061 + GFF2455 0.42 +0.7 513,062 - GFF2455 0.42 +2.1 513,062 - GFF2455 0.42 -0.4 513,062 - GFF2455 0.42 -0.3 513,062 - GFF2455 0.42 -1.2 513,089 - GFF2455 0.46 -1.2 513,089 - GFF2455 0.46 +0.5 513,578 - -0.6 513,941 + GFF2457 0.52 -0.5 513,941 + GFF2457 0.52 +0.4 513,941 + GFF2457 0.52 -0.1 513,942 - GFF2457 0.52 -0.2
Or see this region's nucleotide sequence