Strain Fitness in Variovorax sp. SCN45 around GFF2069

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
115,960	+		GFF2067	0.50	-0.0
115,960	+		GFF2067	0.50	+1.0
115,960	+		GFF2067	0.50	-0.5
115,960	+		GFF2067	0.50	-1.0
115,960	+		GFF2067	0.50	-0.1
115,961	-		GFF2067	0.50	+0.0
115,961	-		GFF2067	0.50	-0.7
115,961	-		GFF2067	0.50	-1.9
115,961	-		GFF2067	0.50	-0.2
115,961	-		GFF2067	0.50	+0.5
115,961	-		GFF2067	0.50	-0.7
115,961	-		GFF2067	0.50	-1.0
115,961	-		GFF2067	0.50	-0.6
115,961	-		GFF2067	0.50	+2.5
115,961	-		GFF2067	0.50	+0.6
115,961	-		GFF2067	0.50	-0.5
115,961	-		GFF2067	0.50	-0.9
115,961	-		GFF2067	0.50	+0.4
115,969	+		GFF2067	0.51	-0.4
115,969	+		GFF2067	0.51	-0.5
115,969	+		GFF2067	0.51	+0.4
115,969	+		GFF2067	0.51	-0.0
115,970	-		GFF2067	0.51	+0.8
115,970	-		GFF2067	0.51	-0.0
115,970	-		GFF2067	0.51	-1.0
115,970	-		GFF2067	0.51	-0.3
116,093	-		GFF2067	0.71	-0.2
116,093	-		GFF2067	0.71	+1.0
116,093	-		GFF2067	0.71	+0.1
116,093	-		GFF2067	0.71	-0.6
116,776	+				-1.1
116,776	+				-0.3
116,776	+				-1.2
116,777	-				+1.0
116,777	-				-0.4
116,777	-				-2.0
116,780	-				-0.6
116,793	+				-1.0
116,793	+				+0.0
116,794	-				-0.1
116,794	-				-0.5
116,794	-				+0.2
116,794	-				-1.4
116,797	+				-0.7
116,797	+				-0.5
116,797	+				+0.1
116,797	+				-2.1
116,797	+				-0.1
116,798	-				+0.1
116,798	-				+0.0
116,798	-				-1.3
116,798	-				+0.3
116,837	+				-0.0
116,837	+				+1.5
116,837	+				-0.0
116,837	+				-0.0
116,837	+				-1.7
116,837	+				-0.6
116,837	+				-0.5
116,837	+				-1.1
116,837	+				-0.3
116,837	+				-2.0
116,837	+				+1.0
116,837	+				+0.4
116,837	+				+0.0
116,838	-				-1.0
116,838	-				+0.2
116,838	-				+0.8
116,838	-				-0.4
116,838	-				-0.5
116,838	-				+0.1
116,838	-				-0.6
116,838	-				-1.2
116,838	-				+0.1
116,838	-				-0.7
116,838	-				-1.1
116,840	+				+0.4
116,841	-				+0.5
116,967	+				-0.7
116,968	+				-0.1
116,968	+				-2.1
116,968	+				-0.1
116,968	+				-1.0
116,968	+				-0.3
116,969	-				-2.3
116,969	-				+0.8
116,969	-				-1.2
116,969	-				+1.5
116,969	-				+0.3
116,969	-				+0.3
117,112	+		GFF2069	0.25	+0.4
117,112	+		GFF2069	0.25	-0.0
117,112	+		GFF2069	0.25	-0.4
117,112	+		GFF2069	0.25	+0.3
117,112	+		GFF2069	0.25	-1.2
117,112	+		GFF2069	0.25	+0.1
117,112	+		GFF2069	0.25	-0.2
117,112	+		GFF2069	0.25	+0.4
117,112	+		GFF2069	0.25	-0.4
117,112	+		GFF2069	0.25	+0.6
117,113	-		GFF2069	0.25	-0.0
117,113	-		GFF2069	0.25	+0.9
117,113	-		GFF2069	0.25	+0.0
117,801	-				+0.2
117,811	+				-0.0
117,811	+				-0.6
117,811	+				+0.3
117,811	+				-0.5
117,811	+				+1.7
117,812	-				+0.4
117,812	-				-1.0
117,812	-				-1.3
117,812	-				-0.7
117,842	+				-0.5
117,842	+				-0.1
117,842	+				-1.8
117,843	-				-0.5
117,843	-				+0.5
118,116	+		GFF2070	0.71	-1.0
118,116	+		GFF2070	0.71	-0.4
118,117	-		GFF2070	0.71	-0.6
118,122	+		GFF2070	0.72	+0.5
118,122	+		GFF2070	0.72	+1.0
118,122	+		GFF2070	0.72	+0.3
118,122	+		GFF2070	0.72	-0.1
118,122	+		GFF2070	0.72	+2.5
118,122	+		GFF2070	0.72	+1.6
118,123	-		GFF2070	0.73	-0.7
118,123	-		GFF2070	0.73	-2.0
118,123	-		GFF2070	0.73	+0.6
118,123	-		GFF2070	0.73	-0.8
118,123	-		GFF2070	0.73	+0.4
118,123	-		GFF2070	0.73	+0.1
118,242	+				-0.9
118,242	+				-0.7
118,242	+				-0.2
118,243	-				-0.2
118,243	-				+1.7
118,762	+				+0.6
118,762	+				+0.1
118,762	+				-0.4
118,762	+				+0.8
118,762	+				+0.6
118,763	-				-1.6
118,763	-				+0.3
118,763	-				-0.5
118,763	-				+1.0
118,763	-				+0.1
118,763	-				-0.5
118,763	-				-2.0
118,763	-				-0.8