Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1677 and GFF1678 are separated by 17 nucleotides GFF1678 and GFF1679 are separated by 123 nucleotides GFF1679 and GFF1680 are separated by 62 nucleotides
GFF1677 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 322,203 to 323,405
GFF1677
GFF1678 - Transcriptional regulator, GntR family, at 323,423 to 324,214
GFF1678
GFF1679 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 324,338 to 325,042
GFF1679
GFF1680 - KEGG: GntR family transcriptional regulator, at 325,105 to 325,986
GFF1680
Position (kb) 323
324
325 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.451 kb on - strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.693 kb on + strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.952 kb on - strand, within GFF1677 at 323.038 kb on + strand, within GFF1677 at 323.502 kb on + strand at 323.502 kb on + strand at 323.503 kb on - strand, within GFF1678 at 323.565 kb on + strand, within GFF1678 at 323.565 kb on + strand, within GFF1678 at 323.763 kb on + strand, within GFF1678 at 323.763 kb on + strand, within GFF1678 at 323.764 kb on - strand, within GFF1678 at 323.764 kb on - strand, within GFF1678 at 324.177 kb on + strand at 324.178 kb on - strand at 324.190 kb on - strand at 324.627 kb on + strand, within GFF1679 at 324.628 kb on - strand, within GFF1679 at 324.628 kb on - strand, within GFF1679 at 324.645 kb on + strand, within GFF1679 at 324.645 kb on + strand, within GFF1679 at 324.645 kb on + strand, within GFF1679 at 324.646 kb on - strand, within GFF1679 at 324.646 kb on - strand, within GFF1679 at 324.814 kb on - strand, within GFF1679 at 325.031 kb on - strand at 325.077 kb on + strand at 325.078 kb on - strand at 325.123 kb on + strand at 325.123 kb on + strand at 325.124 kb on - strand at 325.199 kb on + strand, within GFF1680 at 325.199 kb on + strand, within GFF1680 at 325.199 kb on + strand, within GFF1680 at 325.199 kb on + strand, within GFF1680 at 325.200 kb on - strand, within GFF1680 at 325.200 kb on - strand, within GFF1680 at 325.200 kb on - strand, within GFF1680 at 325.200 kb on - strand, within GFF1680
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 322,450 + GFF1677 0.21 +0.2 322,450 + GFF1677 0.21 -0.9 322,450 + GFF1677 0.21 -0.3 322,451 - GFF1677 0.21 -0.0 322,597 + GFF1677 0.33 -0.1 322,597 + GFF1677 0.33 -0.2 322,691 - GFF1677 0.41 -0.6 322,691 - GFF1677 0.41 -1.3 322,693 + GFF1677 0.41 -0.1 322,694 - GFF1677 0.41 +0.2 322,694 - GFF1677 0.41 +1.0 322,952 - GFF1677 0.62 -0.8 323,038 + GFF1677 0.69 +0.5 323,502 + -0.0 323,502 + +0.7 323,503 - GFF1678 0.10 +0.4 323,565 + GFF1678 0.18 -0.8 323,565 + GFF1678 0.18 +1.2 323,763 + GFF1678 0.43 +0.6 323,763 + GFF1678 0.43 -0.8 323,764 - GFF1678 0.43 +1.0 323,764 - GFF1678 0.43 +0.5 324,177 + -1.2 324,178 - -0.3 324,190 - +0.2 324,627 + GFF1679 0.41 -0.3 324,628 - GFF1679 0.41 +1.3 324,628 - GFF1679 0.41 -0.7 324,645 + GFF1679 0.44 +1.0 324,645 + GFF1679 0.44 -0.9 324,645 + GFF1679 0.44 -0.3 324,646 - GFF1679 0.44 +0.6 324,646 - GFF1679 0.44 -2.2 324,814 - GFF1679 0.68 +0.1 325,031 - +0.8 325,077 + +0.7 325,078 - -2.7 325,123 + +0.6 325,123 + -0.2 325,124 - -0.9 325,199 + GFF1680 0.11 +1.0 325,199 + GFF1680 0.11 +1.8 325,199 + GFF1680 0.11 +0.0 325,199 + GFF1680 0.11 -0.5 325,200 - GFF1680 0.11 +0.3 325,200 - GFF1680 0.11 +0.4 325,200 - GFF1680 0.11 +2.0 325,200 - GFF1680 0.11 -0.2
Or see this region's nucleotide sequence